SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69588

Length: 384 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene69588
ATGGGAGACATGCGGTGGTTTCTGCCCTAGCGGCCTCTGCGATCCCCGCCCTTGTCATGGCTCGAGGTCACAGGATCGAGTCCGTCCCCGAGCTGCCGCTGGTTCTCAGCGATGGCGTCGTGGGGTTGGCTGTCCTCATGCTTTGAAGGTTTTGAAGAAGGTGGGAGCTTTTGCTGACGTCGAAAAGGCCAAGAAAAGTCACAGTATTCGTGCCGGTAAGGGTAAGATGAGGAACAGGCGTTATATTTTACGCAAAGGTCCTCTGATTGTTTATGCCACTGAAGGGGCCAAGCTTGTCAAGGCTTTCAGGAATATTCCAGGTGTGGAAATTGCTTGTGTCGATAGATTGAATCTGCTGAAGCTTGCTCCTGGAGGGCATTTGGG

Ace file of the UniGene sp_v1.1_unigene69588

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L4 n=1 Tax=Prunus armeniaca RepID=RL4_PRUAR	-	-	5.04467e-44	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	protein	-	-	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L4/L1e	IPR002136	-	0.0	90%
Blast2go	Ribosomal protein L4 domain	IPR023574	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK49

Fln msg: Separated hits, possible frame ERROR between 128 and 140, Distance to subject end: 152 aas, your sequence is shorter than subject: 127 - 406

Fln protein: GRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVVGxxxxxALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYILRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHL

Protein Length: 128

Fln nts: ATGGGAGACATGCGGTGGTTTCTGCCCTAGCGGCCTCTGCGATCCCCGCCCTTGTCATGGCTCGAGGTCACAGGATCGAGTCCGTCCCCGAGCTGCCGCTGGTTCTCAGCGATGGCGTCGTGGGGTTxxxxxxxxxxxxTGCTTTGAAGGTTTTGAAGAAGGTGGGAGCTTTTGCTGACGTCGAAAAGGCCAAGAAAAGTCACAGTATTCGTGCCGGTAAGGGTAAGATGAGGAACAGGCGTTATATTTTACGCAAAGGTCCTCTGATTGTTTATGCCACTGAAGGGGCCAAGCTTGTCAAGGCTTTCAGGAATATTCCAGGTGTGGAAATTGCTTGTGTCGATAGATTGAATCTGCTGAAGCTTGCTCCTGGAGGGCATTTGGG

Fln Alignment:

sp_v1.1_unigene69588___RHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVVGLxxxxALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYILRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHL
B8LK49_______________RHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVxxxxALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain