SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69513

Length: 502 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene69513
ATGGGTATATTCTTTGAAGGCTGATATCTGTCAGCTAGGCATGGATCAACGTAAAGTAAACATGCTAGCAAGGGAGTTTTGCGATGATACGTCGGACGTTGCTGTCACTTATATTATCTCATCACATGCTATCTGGATTACAACAAGGACAAGAGAAGATGTCAAAGAGTGATCCTACGTCTGCTATTTTCATGGAGGATGAAGAGGCAGAAGTGAATTTGAAGATAAAGAAAGCATTTTGCCTCCAAAGATTGTTGAAGGAAATCCGTGCTTGGAGTACATTAAATACATTAGTTTCCCATGGTTTGGAAAGTTTGAGGTGCTCCGCAATGAAAAAAATGGTGGAAACAAGACCTACTCTACTATGGAAGAGTTGGTTATAGACTATGAAGCAGAAGCATTGCATCCAGCTGATGTCAAACCTGCTCTCTCAAAGTCTTTGAACCGAATATTGCAGCCGGTGCGAGATCATTTCAAAAATATGCAGAAGCTAAAGATTGCC

Ace file of the UniGene sp_v1.1_unigene69513

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosyl-tRNA synthetase n=3 Tax=Zea mays RepID=B6T638_MAIZE	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	56%
Blast2go	tyrosyl-trna synthetase	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B4FKK9

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 167 - 379

Fln protein: WVYSLKADICQLGMDQRKVNMLAREFCDDTSDVAVTYIISSHAIWITTRTREDVKE*SYVCYFHGG*RGRSEFEDKESILPPKIVEGNPCLEYIKYISFPWFGKFEVLRNEKNGGNKTYSTMEELVIDYEAEALHPADVKPALSKSLNRILQPVRDHFKNMQKLKIA

Protein Length: 168

Fln nts: ATGGGTATATTCTTTGAAGGCTGATATCTGTCAGCTAGGCATGGATCAACGTAAAGTAAACATGCTAGCAAGGGAGTTTTGCGATGATACGTCGGACGTTGCTGTCACTTATATTATCTCATCACATGCTATCTGGATTACAACAAGGACAAGAGAAGATGTCAAAGAGTGATCCTACGTCTGCTATTTTCATGGAGGATGAAGAGGCAGAAGTGAATTTGAAGATAAAGAAAGCATTTTGCCTCCAAAGATTGTTGAAGGAAATCCGTGCTTGGAGTACATTAAATACATTAGTTTCCCATGGTTTGGAAAGTTTGAGGTGCTCCGCAATGAAAAAAATGGTGGAAACAAGACCTACTCTACTATGGAAGAGTTGGTTATAGACTATGAAGCAGAAGCATTGCATCCAGCTGATGTCAAACCTGCTCTCTCAAAGTCTTTGAACCGAATATTGCAGCCGGTGCGAGATCATTTCAAAAATATGCAGAAGCTAAAGATTGCC

Fln Alignment:

sp_v1.1_unigene69513___VYSLKADICQLGMDQRKVNMLAREFCDDTSDVAVTYIISSHAIWITTRTREDV-KE*SYVCYFHGG*RGRSEFEDKESILPPKIVEGNPCLEYIKYISFPWFGKFEVLRNEKNGGNKTYSTMEELVIDYEAEALHPADVKPALSKSLNRILQPVRDHFKNMQKLKI
B4FKK9_______________IFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGFKEGQEKMSKSDPSSAIFMEDDEAQVNVKIKQAFCPPKIVEGNPCLEYIKYIVFPWFGRFEVARKESNGGNKTFTSMDELISDYETGALHPADVKPALAKAINEILQPVRDHFNNNNEAKV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain