SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69405

Length: 315 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene69405
ATGGGGATGGTGGAAAAGAGTGGAGCTGCTGCAAACAGCGAAGCCATGACTTCAGTTTGTTTCTAGCTATACCAGGGGAAGCATACTTCTGAAAAACCCCAGACAAAGGCAGCACCGAGCCCCAATAAGCCTGTAACTTTATCAACTACTGGAAATACTGCTTTAGATGCGGCGAAGGCCGCTTGTTCCCGATGTCGTCAAGGCTTTTTCTGTTCTGATCATGGTTCCCAAGTTGGAGTTGTAAATTCTGGATTTTATAACTCGGTGGCTTCAGAGAGTGCTGCAAAACCTAAATCTACTTTTGTGCCCAAGTAC

Ace file of the UniGene sp_v1.1_unigene69405

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rar1, putative; K13458 disease resistance protein	-	-	1.0e-18	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	rar1-like protein	-	-	3.0962e-34	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	3.0962e-34	66%
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	3.0962e-34	66%
Blast2go	protein stabilization	GO:0050821	Biological Process	3.0962e-34	66%
Blast2go	protein binding	GO:0005515	Molecular Function	3.0962e-34	66%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	3.0962e-34	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cysteine/histidine-rich domain	IPR007051	-	3.0962e-34	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMI0

Fln msg: Overlapping hits, possible frame ERROR between 125 and 76, Distance to subject end: 77 aas, your sequence is shorter than subject: 105 - 223

Fln protein: GDGGKEWSCCKQRSHDFSLFLAIPxxxxxxxxxxxxxxxxxxKPVTLSTTGNTALDAAKAACSRCRQGFFCSDHGSQVGVVNSGFYNSVASESAAKPKSTFVPKY

Protein Length: 106

Fln nts: ATGGGGATGGTGGAAAAGAGTGGAGCTGCTGCAAACAGCGAAGCCATGACTTCAGTTTGTTTCTAGCTATACCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGCCTGTAACTTTATCAACTACTGGAAATACTGCTTTAGATGCGGCGAAGGCCGCTTGTTCCCGATGTCGTCAAGGCTTTTTCTGTTCTGATCATGGTTCCCAAGTTGGAGTTGTAAATTCTGGATTTTATAACTCGGTGGCTTCAGAGAGTGCTGCAAAACCTAAATCTACTTTTGTGCCCAAGTAC

Fln Alignment:

sp_v1.1_unigene69405___DGGKEWSCCKQRSHDFSLFLAIPGEAYF*KTxxxxxxxxxTKAAPSPNKPVTLSTTGNTALDAAKAACSRCRQGFFCSDHGSQVGVVNSGFYNSVASESAAKPKSTFVPK
A9NMI0_______________DGGKEWSCCKQRSHDFSLFLAIPG----CKTxxxxxxxxxTKAAPSPNKPVTLSSTGNTALDAAKAACARCRQGFFCSDHGSPVGVVNSGSYSSVPSESAAKPKPAFVPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain