SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69403

Length: 516 nt

UniGene Fasta

>sp_v1.1_unigene69403
ATGGGCAGAAGGAAGATTTTCTCTTTCTACACAGTGAGAGGCTGGCTATTGCTTTTGGGCTTATTGGTACACCTGCAGGGGCACCTATTCAAGTTATCAAGAACCTCCGTATGTGCGGTGACTGCCACAATGCTACCAAGTACATCTCCATGGTTGTTGGGAGAGAAATTGTTGTGAGGGATGCTAGTCGCTTCCATCATTTTAAGGATGGGCTGTGTTCTTGCGGGGATTATTGGTGATGGCAGAATCATGATGTAATTCCTATAGGAATCACCTGTGTAAGTAAATAATAAATTTTAGGTTGGTCTACTATTTACTTATACAAGTGATCCCATGATCATAGCAAACCAGCTGTTTTACTACTCTTAGAGTTTGGGCTGCAAAGGCTGTGGCTGTCTGAAATGGATGTTGTGAATTCTTCTCCATGACCTTAATGTTTCCTAGTCGTTACACTGCAGAAACAGAACTTGCAATATGATGTGTTGTTATTCTTAGACTAAAGTTGATTGGCATTAA

Ace file of the UniGene sp_v1.1_unigene69403

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	9.0e-28	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.21361e-28	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 79 - 246

Fln protein: GQKEDFLFLHSERLAIAFGLIGTPAGAPIQVIKNLRMCGDCHNATKYISMVVGREIVVRDASRFHHFKDGLCSCGDYW*

Protein Length: 80

Fln nts: ATGGGCAGAAGGAAGATTTTCTCTTTCTACACAGTGAGAGGCTGGCTATTGCTTTTGGGCTTATTGGTACACCTGCAGGGGCACCTATTCAAGTTATCAAGAACCTCCGTATGTGCGGTGACTGCCACAATGCTACCAAGTACATCTCCATGGTTGTTGGGAGAGAAATTGTTGTGAGGGATGCTAGTCGCTTCCATCATTTTAAGGATGGGCTGTGTTCTTGCGGGGATTATTGGTGA___TGGCAGAATCATGATGTAATTCCTATAGGAATCACCTGTGTAAGTAAATAATAAATTTTAGGTTGGTCTACTATTTACTTATACAAGTGATCCCATGATCATAGCAAACCAGCTGTTTTACTACTCTTAGAGTTTGGGCTGCAAAGGCTGTGGCTGTCTGAAATGGATGTTGTGAATTCTTCTCCATGACCTTAATGTTTCCTAGTCGTTACACTGCAGAAACAGAACTTGCAATATGATGTGTTGTTATTCTTAGACTAAAGTTGATTGGCATTAA

Fln Alignment:

sp_v1.1_unigene69403___QKEDFLFLHSERLAIAFGLIGTPAGAPIQVIKNLRMCGDCHNATKYISMVVGREIVVRDASRFHHFKDGLCSCGDYW
D5AAE0_______________QKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain