SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69386

Length: 408 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene69386
TAAACATAGTTTGAGGGTTTTGTATAAACGAACGGCTGTGTGTAGGCCCAGCAGTTGCAAGTTTTTACTGTGCAAGATGTTGGGAGCCGGAATAGAAACGGAGAAGGGGATGTCAAATTCGCTTTGTCAGCAGGGGCAGAGCCTTCTGTTTCCTCCTCAGATCATAGTCTGCCTTCATCTTCAACCATGAAATTTAAAGTAGGGAACTTCGGCAATGCCTCCCACCATGGCGTAGTGATGACAAGGATGGCCATTACATGTTTGAACTTGGAGAGAATTTGACGCCTCAATGTAATAACATATATTCACCTCACTGTTATTTATTTGATTTCCGATGGGTTTTGCCTAAATGTTTGTCTAGGATCTCAGCAAAGACAATTTTAGGCTTACTGTTTGATACCTAGCTTA

Ace file of the UniGene sp_v1.1_unigene69386 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Afc, putative n=1 Tax=Ricinus communis RepID=B9T436_RICCO	-	-	8.0e-05	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN82

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 134 - 179

Fln protein: NIV*GFCINERLCVGPAVASFYCARCWEPE*KRRRGCQIRFVSRGRAFCFLLRS*SAFIFNHEI*SRELRQCLPPWRSDDKDGHYMFELGENLTPQCNNIYSPHCYLFDFRWVLPKCLSRISAKTILGLLFDT*

Protein Length: 135

Fln nts: TAAACATAGTTTGAGGGTTTTGTATAAACGAACGGCTGTGTGTAGGCCCAGCAGTTGCAAGTTTTTACTGTGCAAGATGTTGGGAGCCGGAATAGAAACGGAGAAGGGGATGTCAAATTCGCTTTGTCAGCAGGGGCAGAGCCTTCTGTTTCCTCCTCAGATCATAGTCTGCCTTCATCTTCAACCATGAAATTTAAAGTAGGGAACTTCGGCAATGCCTCCCACCATGGCGTAGTGATGACAAGGATGGCCATTACATGTTTGAACTTGGAGAGAATTTGACGCCTCAATGTAATAACATATATTCACCTCACTGTTATTTATTTGATTTCCGATGGGTTTTGCCTAAATGTTTGTCTAGGATCTCAGCAAAGACAATTTTAGGCTTACTGTTTGATACCTAGCTTA

Fln Alignment:

sp_v1.1_unigene69386___PPWRSDDKDGHYMFELGENLT
A9NN82_______________PPWRSDDKDGHYMFEIGENLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain