SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69355

Length: 530 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene69355
ATGGGGCTCCCTGCAGGAGTATCGAAATCCTCTCCGCCTTTCTTCAATAGACGCGGGGCCCCGCTTTGACTTGGGAAACTGTATTCTCCCTTTATTACCAAGGACTCTCACCATTCTCAATGTGAGATATTCTGATATTCAGAGTTACAGACCCCCTTGCTTGATCATGTTGGTTAGCCCAAAAGGCCGATTGGAACTGAGAATGAAGCAGCAGAGCAGAGAGCTCAGCCCAGACCGAGCAAAGCCCAGCTGGATCGAACCCAAATCAAGGCTTATGCCCAGAAGAGTTCAGGTCTTGTATTATCTTAGCAGGAATGGTCAGCTTGAACATCCCCATTTCATGGAAGTTACACTGTCTTCAAATGAAGGCCTATACTTGAGCGATGTTAAACAGCGTTTGAATGCTCTGCGTGGAAAAGGCATGGCCAACGCGTTCTCCTGGTCATCCAAGAGGAGCTACAAGAATGGCTATGTCTGGCATGATTTATCAGAAGCAACAACCGAAAAATAATGCCAAGAAACCTCCATCC

Ace file of the UniGene sp_v1.1_unigene69355

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF966 domain containing protein	-	-	2.0e-40	81%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	65%
Blast2go	protein	-	-	2.85567e-31	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.85567e-31	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF966	IPR010369	-	2.85567e-31	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7LIE7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 429 aas, your sequence is shorter than subject: 115 - 543

Fln protein: MLVSPKGRLELRMKQQSRELSPDRAKPSWIEPKSRLMPRRVQVLYYLSRNGQLEHPHFMEVTLSSNEGLYLSDVKQRLNALRGKGMANAFSWSSKRSYKNGYVWHDLSEATTEK*

Protein Length: 116

Fln nts: ATGGGGCTCCCTGCAGGAGTATCGAAATCCTCTCCGCCTTTCTTCAATAGACGCGGGGCCCCGCTTTGACTTGGGAAACTGTATTCTCCCTTTATTACCAAGGACTCTCACCATTCTCAATGTGAGATATTCTGATATTCAGAGTTACAGACCCCCTTGCTTGATC_-_ATGTTGGTTAGCCCAAAAGGCCGATTGGAACTGAGAATGAAGCAGCAGAGCAGAGAGCTCAGCCCAGACCGAGCAAAGCCCAGCTGGATCGAACCCAAATCAAGGCTTATGCCCAGAAGAGTTCAGGTCTTGTATTATCTTAGCAGGAATGGTCAGCTTGAACATCCCCATTTCATGGAAGTTACACTGTCTTCAAATGAAGGCCTATACTTGAGCGATGTTAAACAGCGTTTGAATGCTCTGCGTGGAAAAGGCATGGCCAACGCGTTCTCCTGGTCATCCAAGAGGAGCTACAAGAATGGCTATGTCTGGCATGATTTATCAGAAGCAACAACCGAAAAATAATGCCAAGAAACCTCCATCC

Fln Alignment:

sp_v1.1_unigene69355___LELRMKQQSRELSPDRAKPSWIE--PKSRLMPRRVQVLYYLSRNGQLEHPHFMEVTLSSNEGLYLSDVKQRLNALRGKGMANAFSWSSKRSYKNGYVWHDLSE
D7LIE7_______________MEARMKKYSREVSPERAKV-WTEKSPKYHQKIKKVQIVYYLSKNRQLEHPHFMEVLISSPNGLYLRDVTERLNVLRGRGMASMYSWSSKRSYRNGFVWHDLSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain