SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69254

Length: 369 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene69254
TCGAACCAGCGACCGTTGCGGCCGAGGTTTCGTGAAGCTTTAAGAGAAATAGTGCAAAATCGACGTGGATTAGGGTGGATTTTGTGCTATGGAGAAACTCTGCTGGAATTCCAAGTGCCGGGCCGTGGCTTCAGCCGTATGGAGGACAGGGTGGATTTTACGTTCGGGATGCTTTGCCGATCTCTGTGACTCCTGCGGGTCTGCATATGATCAATTGAGATTTTGTGAGGCATTTCACTTGGACGAAGATGGTTGGAAGGATTGCAACACTTGTAAAAAGCGTCTCCATTGTGGATGTATTGCTTCTATTCATTTGTTTATGCTTCTTGATCATGGAGGCATAGAGTGCATCAATTGTGCGAAGAAGAA

Ace file of the UniGene sp_v1.1_unigene69254 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HSL1; HSL1 (HSI2-LIKE 1); transcription factor	-	-	4.0e-27	56%
FL-Next	Isoform 2 of B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2	-	-	0.0	56%
Blast2go	transcriptional factor b3 family protein	-	-	9.31791e-31	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of seed germination	GO:0010030	Biological Process	9.31791e-31	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q5CCK4-2

Fln msg: Distance to subject end: 679 aas, your sequence is shorter than subject: 93 - 776

Fln protein: MEKLCWNSKCRAVASAVWRTGWILRSGCFADLCDSCGSAYDQLRFCEAFHLDEDGWKDCNTCKKRLHCGCIASIHLFMLLDHGGIECINCAKK

Protein Length: 94

Fln nts: TCGAACCAGCGACCGTTGCGGCCGAGGTTTCGTGAAGCTTTAAGAGAAATAGTGCAAAATCGACGTGGATTAGGGTGGATTTTGTGCT_-_ATGGAGAAACTCTGCTGGAATTCCAAGTGCCGGGCCGTGGCTTCAGCCGTATGGAGGACAGGGTGGATTTTACGTTCGGGATGCTTTGCCGATCTCTGTGACTCCTGCGGGTCTGCATATGATCAATTGAGATTTTGTGAGGCATTTCACTTGGACGAAGATGGTTGGAAGGATTGCAACACTTGTAAAAAGCGTCTCCATTGTGGATGTATTGCTTCTATTCATTTGTTTATGCTTCTTGATCATGGAGGCATAGAGTGCATCAATTGTGCGAAGAAGAA

Fln Alignment:

sp_v1.1_unigene69254___KLCWNSKCRAVA-SAVWRTGWILRSGCFADLCDSCGSAYDQLRFCEAFHLDEDGWKDCNTCKKRLHCGCIASIHLFMLLDHGGIECINCAKK
Q5CCK4-2_____________KVCMNALCGAASTSGEWKKGWPMRSGDLASLCDKCGCAYEQSIFCEVFHAKESGWRECNSCDKRLHCGCIASRFMMELLENGGVTCISCAKK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain