SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69221

Length: 377 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene69221
AGATGAACCCTGAAGGAAAAGTTCCTGTCTTTATTCAAGATCGATGATAAGTGGATTCCAGACTCTGATGTTATAACCCAGATATTGGAGGAAAAGTACCCGGAACCACCTTTGGCAACCCCACCTGAGAAGACAACTGTAGGGTCAAAGATTTTCTCAACATTCATCGGCTTCTTGAAAAGCAAGGGTCGTGACGTTGGCTGTGAGTCAGGCTAGCCCCAAAGCTTTATCATTTGAAGGTTGCCCTAGGCCACTTCAAAAAGTGGTCTGTTCCAGAAGAGTTCACTTATGTCCAGAATTATATGAAGGCTCTCTTCTCTCGAGAATCATTTCAGCGTACAAACGCTGCAGATGAGCAATATATTATTGCGGGTTGG

Ace file of the UniGene sp_v1.1_unigene69221

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dehydroascorbate reductase n=1 Tax=Pinus bungeana RepID=B2ZHM6_PINBU	-	-	94%
FL-Next	tr=Dehydroascorbate reductase; Pinus bungeana (Lacebark pine).	-	-	86%
Blast2go	dehydroascorbate reductase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutathione dehydrogenase (ascorbate).	EC:1.8.5.1	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	85%
Blast2go	Glutathione metabolism	00480	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	protein glutathionylation	GO:0010731	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	glutathione dehydrogenase (ascorbate) activity	GO:0045174	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B2ZHM6

Fln msg: Separated hits, possible frame ERROR between 207 and 213, Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 126 - 215

Fln protein: R*TLKEKFLSLFKIDDKWIPDSDVITQILEEKYPEPPLATPPEKTTVGSKIFSTFIGFLKSKGRDVGCxxxLAPKLYHLKVALGHFKKWSVPEEFTYVQNYMKALFSRESFQRTNAADEQYIIAGW

Protein Length: 127

Fln nts: AGATGAACCCTGAAGGAAAAGTTCCTGTCTTTATTCAAGATCGATGATAAGTGGATTCCAGACTCTGATGTTATAACCCAGATATTGGAGGAAAAGTACCCGGAACCACCTTTGGCAACCCCACCTGAGAAGACAACTGTAGGGTCAAAGATTTTCTCAACATTCATCGGCTTCTTGAAAAGCAAGGGTCGTGACGTTGGCTGTGAxxxxxxGCTAGCCCCAAAGCTTTATCATTTGAAGGTTGCCCTAGGCCACTTCAAAAAGTGGTCTGTTCCAGAAGAGTTCACTTATGTCCAGAATTATATGAAGGCTCTCTTCTCTCGAGAATCATTTCAGCGTACAAACGCTGCAGATGAGCAATATATTATTGCGGGTTGG

Fln Alignment:

sp_v1.1_unigene69221___LFKIDDKWIPDSDVITQILEEKYPEPPLATPPEKTTVGSKIFSTFIGFLKSKGRDVGCExxLAPKLYHLKVALGHFKKWSVPEEFTYVQNYMKALFSRESFQRTNAADEQYIIAGW
B2ZHM6_______________VIKIDDKWIPDSDVITQILEEKYPEPPLATPPEKATVGSKIFSTFIGFLKSKDPNDGTExxLAPKLYHMKVALGHFKKWSVPEEFTYVQSYMKAVFSRESFQRTNAADEQYIIAGW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain