SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69068

Length: 397 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene69068
CGTCGTGACCTTGGCTGTCACTCATTGTGGCACTCAGTCGCGCGGGGCTTTTCGAGGCTGCGATAGGGATTCTGGAGGACATGAAAAACAGTGGCTATTTCCTTATGGATTCGATTCTTATTACTTTGGTCACATGCCAGGCCCGCGCCGGTAAGGTCGATGAAGCTATAGAACTCTTTAAACAGGCCGACAATTACAACTGTAAACCTTCCATATTGTCATATAATAGATTTCTGAACTTGTTGATTGAAAATAAACCGGTTCAGACAGCTATGGGTTTCTTCAGAGACTATTTGTGCAGAAACATATGCCCTGATTTGTATACATTTAATACTCTAGTCAAGGGGCTTTGCAGGGCTGGGAATGTTGATGAGGGTTTTACGTTATTAGAAGAAAT

Ace file of the UniGene sp_v1.1_unigene69068

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9REV6_RICCO	-	-	4.0e-12	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Blast2go	pentatricopeptide repeat-containing protein	-	-	6.68844e-13	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	6.68844e-13	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 222 aas, your sequence is shorter than subject: 131 - 486

Fln protein: S*PWLSLIVALSRAGLFEAAIGILEDMKNSGYFLMDSILITLVTCQARAGKVDEAIELFKQADNYNCKPSILSYNRFLNLLIENKPVQTAMGFFRDYLCRNICPDLYTFNTLVKGLCRAGNVDEGFTLLEE

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTGGCACTCAGTCGCGCGGGGCTTTTCGAGGCTGCGATAGGGATTCTGGAGGACATGAAAAACAGTGGCTATTTCCTTATGGATTCGATTCTTATTACTTTGGTCACATGCCAGGCCCGCGCCGGTAAGGTCGATGAAGCTATAGAACTCTTTAAACAGGCCGACAATTACAACTGTAAACCTTCCATATTGTCATATAATAGATTTCTGAACTTGTTGATTGAAAATAAACCGGTTCAGACAGCTATGGGTTTCTTCAGAGACTATTTGTGCAGAAACATATGCCCTGATTTGTATACATTTAATACTCTAGTCAAGGGGCTTTGCAGGGCTGGGAATGTTGATGAGGGTTTTACGTTATTAGAAGAAAT

Fln Alignment:

sp_v1.1_unigene69068___SLIVALSRAGLFEAAIGILEDMKNSGYFLMDSILITLVTCQARAGKVDEAIELFKQADNYNCKPSILSYNRFLNLLIENKPVQTAMGFFRDYLCRNICPDLYTFNTLVKGLCRAGNVDEGFTLLEE
D5AAH0_______________TLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain