SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69020

Length: 567 nt

UniGene Fasta

>sp_v1.1_unigene69020
CGTCGTGACCTTGGCTGTCACTCAGTTCTGCAGATAAGCGGGGAGCGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGATCCCGTGGAAAATTCCTTAGGCGTTTCCGGCTGCCGGAGAATGTGAAGCTGGAAGAGATCAAGGCGAGCATGGAAAATGGAGTGCTGACAGTGACAGTGCCGAAGCAGGCAGAACCCCAACCTCCTCAACCCAAATCCATCGAGATCTCTGGCTGACTGAAGAGGTGAAATTGGGTCTGCTGTTGCAGTAGGGTGTACTTGTTACGGAATGTGTAGATGTGTGTCGTAAGCCTCCGTCCACTATCCAATCCAGAAAATAAACACCTCCATTCCCATTGCCAGTTGTTACATCGCTTACATTGAGTTTGTATGTGTTGTGCGTTTCTCAATTCCCATTCTCATTCCCAGTTGTTACATCGCTTACATTGAGTTTGTATGTGTTGTGCGTTTCTCAATAAAATATAATAAGAGTTTGTATTTGTTGTGCGATTTCTCAATAATATAATAAAAGGAGACGCAGGTTCAGGGAAC

Ace file of the UniGene sp_v1.1_unigene69020

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	7.0e-24	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	low molecular weight heat-shock protein	-	-	2.86251e-25	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp20	IPR002068	-	2.86251e-25	90%
Blast2go	HSP20-like chaperone	IPR008978	-	2.86251e-25	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTL9

Fln msg: your sequence is shorter than subject: 84 - 160

Fln protein: RRDLGCHSVLQISGERSKEEEHKNDKWHRIERSRGKFLRRFRLPENVKLEEIKASMENGVLTVTVPKQAEPQPPQPKSIEISG*

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCTGCAGATAAGCGGGGAGCGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGATCCCGTGGAAAATTCCTTAGGCGTTTCCGGCTGCCGGAGAATGTGAAGCTGGAAGAGATCAAGGCGAGCATGGAAAATGGAGTGCTGACAGTGACAGTGCCGAAGCAGGCAGAACCCCAACCTCCTCAACCCAAATCCATCGAGATCTCTGGCTGA___CTGAAGAGGTGAAATTGGGTCTGCTGTTGCAGTAGGGTGTACTTGTTACGGAATGTGTAGATGTGTGTCGTAAGCCTCCGTCCACTATCCAATCCAGAAAATAAACACCTCCATTCCCATTGCCAGTTGTTACATCGCTTACATTGAGTTTGTATGTGTTGTGCGTTTCTCAATTCCCATTCTCATTCCCAGTTGTTACATCGCTTACATTGAGTTTGTATGTGTTGTGCGTTTCTCAATAAAATATAATAAGAGTTTGTATTTGTTGTGCGATTTCTCAATAATATAATAAAAGGAGACGCAGGTTCAGGGAAC

Fln Alignment:

sp_v1.1_unigene69020___VLQISGERSKEEEHKNDKWHRIERSRGKFLRRFRLPENVKLEEIKASMENGVLTVTVXXXXXXXXXXXXSIEISG
A9NTL9_______________ILQISGERSKEEEHKNDKWHRIERSRGKFLRRFRLPENAKVEEIKASMENGVLTVTVPKQPEPQPPQPKSIEISG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain