SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68981

Length: 408 nt

UniGene Fasta

>sp_v1.1_unigene68981
CGTCGTGACCTTGGCTGTCACTCAGTTGAGCATCCAGAGCAAGACATAGTCCAATTGTAAATGACCACAGATGGTATAGTCACCCATACTTGTTTATCGTTATTAGTACTTTCTCTGTAAGCCATTCCCCCCATATATCTCTCTCAATTTCGACCGTTTGCTGTTTAGCCTCGACGAACTGGAAGTATTCTGTAGTGTATTAATGGAGATTATTCCACACGAAATCGGTCGAGAGTGCTTGCTCAGAGTATCTTATAAGTCACATGGTCAGCTCAAAGCTGTGTGCAGAAGCTGGGAAGCTATGCTGAGTAGCCCCCGGTTCTATGAGGACAGAAAAAATCATGGGATTAGCGAACAGTTGATATGTTTGATTCAGACCATTCCTCAAAGGAAGTCCTCCGAGGATAA

Ace file of the UniGene sp_v1.1_unigene68981

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box-like protein (Fragment) n=9 Tax=Picea sitchensis RepID=E0ZA00_PICSI	-	-	4.0e-20	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	f-box-like protein	-	-	7.2578e-20	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	7.2578e-20	81%
Blast2go	F-box domain, Skp2-like	IPR022364	-	7.2578e-20	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRS6

Fln msg: Distance to subject end: 280 aas, your sequence is shorter than subject: 68 - 353

Fln protein: MEIIPHEIGRECLLRVSYKSHGQLKAVCRSWEAMLSSPRFYEDRKNHGISEQLICLIQTIPQRKSSED

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGAGCATCCAGAGCAAGACATAGTCCAATTGTAAATGACCACAGATGGTATAGTCACCCATACTTGTTTATCGTTATTAGTACTTTCTCTGTAAGCCATTCCCCCCATATATCTCTCTCAATTTCGACCGTTTGCTGTTTAGCCTCGACGAACTGGAAGTATTCTGTAGTGTATTA_-_ATGGAGATTATTCCACACGAAATCGGTCGAGAGTGCTTGCTCAGAGTATCTTATAAGTCACATGGTCAGCTCAAAGCTGTGTGCAGAAGCTGGGAAGCTATGCTGAGTAGCCCCCGGTTCTATGAGGACAGAAAAAATCATGGGATTAGCGAACAGTTGATATGTTTGATTCAGACCATTCCTCAAAGGAAGTCCTCCGAGGATAA

Fln Alignment:

sp_v1.1_unigene68981___IPHEIGRECLLRVSYKSHGQLKAVCRSWEAMLSSPRFYEDRKNHGISEQLICLIQTIPQRKSSED
B8LRS6_______________LPHEIVRECLLRVNYNSHDNLKAVCRNWETMLTSPLFYEDRKISGTSEQFICLLQAISQGKSPQD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
110			33	66	0.997461
112		33		66	0.997461
113		66	33		0.997459
115		66	33		0.997458
116	33			66	0.997457
117		33	66		0.997457
118		33		66	0.997457
119	66			33	0.997457
128	33	66			0.997476
130		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain