SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68920

Length: 372 nt

UniGene Fasta

>sp_v1.1_unigene68920
CGTCGTGACCTTGGCTGTCACTCAAGGAACCAGGATGCAGCTGGATTGAGGTAAAGAGTAGGGTACATGCATTCCTTGTGGGAGACAAATCACACCCAGAAACAGAGAAGATATATGCAATGCTGGCCATATTAGCAGAGCAGATGAAGGAAGCAGGTTATGTGCCCATCAGGGGCTTTGTTTTGCATGATGCAGATGAGGAATAGAAGGAACCTATCCTGTACTGTCACAATGAGAATCCCGCCATTGCATTTAAAGTTATGAGTACATCCATTGTGTTTTCTGTTGGCGTAATCAAGAACCCCTGAATATGCAGTGATTGGCGACAATGGCATAAAATCCATTCTCCAATGGTGTTAACTAAAGTTATTG

Ace file of the UniGene sp_v1.1_unigene68920

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	2.0e-25	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	pentatricopeptide repeat protein	-	-	4.46149e-25	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 21 aas, your sequence is shorter than subject: 123 - 246

Fln protein: S*PWLSLKEPGCSWIEVKSRVHAFLVGDKSHPETEKIYAMLAILAEQMKEAGYVPIRGFVLHDADEE*KEPILYCHNENPAIAFKVMSTSIVFSVGVIKNP*ICSDWRQWHKIHSPMVLTKVI

Protein Length: 124

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGAACCAGGATGCAGCTGGATTGAGGTAAAGAGTAGGGTACATGCATTCCTTGTGGGAGACAAATCACACCCAGAAACAGAGAAGATATATGCAATGCTGGCCATATTAGCAGAGCAGATGAAGGAAGCAGGTTATGTGCCCATCAGGGGCTTTGTTTTGCATGATGCAGATGAGGAATAGAAGGAACCTATCCTGTACTGTCACAATGAGAATCCCGCCATTGCATTTAAAGTTATGAGTACATCCATTGTGTTTTCTGTTGGCGTAATCAAGAACCCCTGAATATGCAGTGATTGGCGACAATGGCATAAAATCCATTCTCCAATGGTGTTAACTAAAGTTATTG

Fln Alignment:

sp_v1.1_unigene68920___KEPGCSWIEVKSRVHAFLVGDKSHPETEKIYAMLAILAEQMKEAGYVPIRGFVLHDADEE*KEPILYCHNENPAIAFKVMSTSIVFSVGVIKNP*ICSDWRQWHKIHSPMVLTKVI
D5AAE0_______________KQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain