SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68863

Length: 367 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene68863
CTGTCAACACCACACCTTTAATTATGTCGTTGAAGATGGATTTACATATTGTGTCGTGGCAGATGAATCAGCTGGAAGACAAGTACCGATGGCCTTCCTGGAGCGCATTAAAGATGAGTTTAAGAAGACATATAGTGATGGAAGAGCTGAAGTAGCTATTGCCAACGGTCTTCACCAGGAATTTGGGCCAAAATTGAAAGAGCACATGGACTATTGGCTTTGACACTCAAGAGGATGAGATGATCCTTGAACCTATTCTTAAATGGGCTGGAAACCCAAATATCATTATTGCAATAAAAGCATTTGGTATAAGGGCAACTGTACAGTTAGTGGATTTGCACATTTTCATTGTTCCACGGGTTATCTT

Ace file of the UniGene sp_v1.1_unigene68863

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vesicle-associated membrane protein, putative	-	-	1.0e-23	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	vesicle-associated membrane synaptobrevin 7b	-	-	1.06832e-31	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.06832e-31	81%
Blast2go	mRNA export from nucleus	GO:0006406	Biological Process	1.06832e-31	81%
Blast2go	cytosol	GO:0005829	Cellular Component	1.06832e-31	81%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	1.06832e-31	81%
Blast2go	nuclear membrane	GO:0031965	Cellular Component	1.06832e-31	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.06832e-31	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.06832e-31	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUI3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 50 aas, your sequence is shorter than subject: 74 - 221

Fln protein: CQHHTFNYVVEDGFTYCVVADESAGRQVPMAFLERIKDEFKKTYSDGRAEVAIANGLHQEFGPKLKEHMDYWL*

Protein Length: 75

Fln nts: CTGTCAACACCACACCTTTAATTATGTCGTTGAAGATGGATTTACATATTGTGTCGTGGCAGATGAATCAGCTGGAAGACAAGTACCGATGGCCTTCCTGGAGCGCATTAAAGATGAGTTTAAGAAGACATATAGTGATGGAAGAGCTGAAGTAGCTATTGCCAACGGTCTTCACCAGGAATTTGGGCCAAAATTGAAAGAGCACATGGACTATTGGCTTTGACACTCAAGAGGATGAGATGATCCTTGAACCTATTCTTAAATGGGCTGGAAACCCAAATATCATTATTGCAATAAAAGCATTTGGTATAAGGGCAACTGTACAGTTAGTGGATTTGCACATTTTCATTGTTCCACGGGTTATCTT

Fln Alignment:

sp_v1.1_unigene68863___CQHHTFNYVVEDGFTYCVVADESAGRQVPMAFLERIKDEFKKTYSDGRAEVAIANGLHQEFGPKLKEHMDYWL*H
A9NUI3_______________CQRHTFNYLVEDGFTYCVVADESVGRQVPIAFLERIKDEFKKRYSDGRAEVAIANGLNQEFGPKLKQHMDYCAQH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain