SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68848

Length: 368 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene68848
AAAGTTAAGTGATGGTAAATCTTCACATATACCTTCACTTAACTTTGATATTACAGTTAAGTGATGGTAAATCTTCACATATACCTTGTCGTGATTTGGCTGTCACTCGTTTGTTGCAGTCTTCTTTGAGTGGACATGGCCGTGTATCGCTTATATGCACTATTACACCAGCATCTAGTAATATGGAAGAGACACATAACACTCTAAAGTTTGCCCACAGAGCCAAGCGAGTTGAGCTCCATACAGCTCCAAACAGGATCATTGATGATAAGTCACTGATCAAGAAGTACCAAAAGCAAATATGTAGTTTGAAGCAGGAGCTTGAACAGGTTAAGAGGGGTACTCTTGTAGCTTCTAGTCAAGAGGAT

Ace file of the UniGene sp_v1.1_unigene68848

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin heavy chain, putative	-	-	4.0e-37	68%
FL-Next	sp=Kinesin-like protein FLA10; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	38%
Blast2go	kinesin heavy	-	-	4.0502e-39	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	4.0502e-39	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kinesin, motor domain	IPR001752	-	4.0502e-39	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P46869

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 389 aas, your sequence is shorter than subject: 122 - 786

Fln protein: S*VMVNLHIYLHLTLILQLSDGKSSHIPCRDLAVTRLLQSSLSGHGRVSLICTITPASSNMEETHNTLKFAHRAKRVELHTAPNRIIDDKSLIKKYQKQICSLKQELEQVKRGTLVASSQED

Protein Length: 123

Fln nts: AAAGTTAAGTGATGGTAAATCTTCACATATACCTTCACTTAACTTTGATATTACAGTTAAGTGATGGTAAATCTTCACATATACCTTGTCGTGATTTGGCTGTCACTCGTTTGTTGCAGTCTTCTTTGAGTGGACATGGCCGTGTATCGCTTATATGCACTATTACACCAGCATCTAGTAATATGGAAGAGACACATAACACTCTAAAGTTTGCCCACAGAGCCAAGCGAGTTGAGCTCCATACAGCTCCAAACAGGATCATTGATGATAAGTCACTGATCAAGAAGTACCAAAAGCAAATATGTAGTTTGAAGCAGGAGCTTGAACAGGTTAAGAGGGGTACTCTTGTAGCTTCTAGTCAAGAGGAT

Fln Alignment:

sp_v1.1_unigene68848___VMVNLHIYLHLTLILQLSDGKSSHIPCRDLAVTRLLQSSLSGHGRVSLICTITPASSNMEETHNTLKFAHRAKRVELHTAPNRIIDDKSLIKKYQKQICSLKQEL
P46869_______________IKINLSLTALGNVISALVDGKSGHIPYRDSKLTRLLQDSLGGNTKTVMVANIGPADWNYDETMSTLRYANRAKNIQNKPKINEDPKD-AMLRQFQEEIKKLKEQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain