SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68777

Length: 267 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene68777
TCACTTGGGAGTTGAGGATGAAGGAGCACTGTCACAGAGCATATACATATGCAAGCAGAATGAAGAATTTGGGCCTCAAGGTTATCTATCCTGGCCTAGAAGATCACCCTCAGTATGCCCTTTTGAAGTCCCTGGTAAACAGTGGGTATGGGTATGGAGGGATACTGTGTGTGGACATGGACACGGAAGAGAGGGCTAATAAGCTTATGTACCACCTGCAGAATTATACACAGTTTGGACTGATGGCGGTGAGCTTGGGGTACTATG

Ace file of the UniGene sp_v1.1_unigene68777

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cystathionine gamma-synthase, putative n=1 Tax=Ricinus communis RepID=B9RYU1_RICCO	-	-	2.0e-33	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	1.415e-39	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methionine gamma-lyase.	EC:4.4.1.11	-	1.415e-39	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		1.415e-39	83%
Blast2go	Selenocompound metabolism	00450		1.415e-39	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	methionine gamma-lyase activity	GO:0018826	Molecular Function	1.415e-39	83%
Blast2go	cytosol	GO:0005829	Cellular Component	1.415e-39	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	1.415e-39	83%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	1.415e-39	83%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	1.415e-39	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2J0

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 88 - 438

Fln protein: TWELRMKEHCHRAYTYASRMKNLGLKVIYPGLEDHPQYALLKSLVNSGYGYGGILCVDMDTEERANKLMYHLQNYTQFGLMAVSLGYY

Protein Length: 89

Fln nts: TCACTTGGGAGTTGAGGATGAAGGAGCACTGTCACAGAGCATATACATATGCAAGCAGAATGAAGAATTTGGGCCTCAAGGTTATCTATCCTGGCCTAGAAGATCACCCTCAGTATGCCCTTTTGAAGTCCCTGGTAAACAGTGGGTATGGGTATGGAGGGATACTGTGTGTGGACATGGACACGGAAGAGAGGGCTAATAAGCTTATGTACCACCTGCAGAATTATACACAGTTTGGACTGATGGCGGTGAGCTTGGGGTACTATG

Fln Alignment:

sp_v1.1_unigene68777___LRMKEHCHRAYTYASRMKNLGLKVIYPGLEDHPQYALLKSLVNSGYGYGGILCVDMDTEERANKLMYHLQNYTQFGLMAVSLGYY
A9P2J0_______________LRMKEHCHRSYTYASRMKKMGLKVIYPGLEDHPQYALLKSMVNSGYGYGGMLCVDMESEERANMLMSHLQNYTQFGLMAVSLGYY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain