SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68667

Length: 278 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene68667
ATGGGTACCGTTCTCAACTTAACTACTCAAAATCTCAGTTAGAGAATGCATCGGAACGCCTTTTTATATCTACCAGACTTTGAAGGACTGTGAAGGATGCTTGTCTGGGCATGTCAGGCAAAGCATTGCTCAACCTATCCCAAAAGATATCCAAGATTGCATTAACAGGATACAAAATGCTTTTGCATCGTCAATGTCAAATGATTTGCATATAGCCATGGCTTTGGATGCACTATCAGAACCATTGAAGATTATGAATGATATAATGTTTACTCGCC

Ace file of the UniGene sp_v1.1_unigene68667

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteinyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RP10_RICCO	-	-	7.0e-16	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	cysteinyl-trna synthetase	-	-	1.1119e-28	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ17

Fln msg: Overlapping hits, possible frame ERROR between 149 and 62, Distance to subject end: 111 aas, your sequence is shorter than subject: 92 - 602

Fln protein: GYRSQLNYSKSQLENASERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQDCINRIQNAFASSMSNDLHIAMALDALSEPLKIMNDIMFTR

Protein Length: 93

Fln nts: ATGGGTACCGTTCTCAACTTAACTACTCAAAATCTCAGTTAGAGAATGCATCGGAACGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAGATTGCATTAACAGGATACAAAATGCTTTTGCATCGTCAATGTCAAATGATTTGCATATAGCCATGGCTTTGGATGCACTATCAGAACCATTGAAGATTATGAATGATATAATGTTTACTCGCC

Fln Alignment:

sp_v1.1_unigene68667___YRSQLNYSKSQLENASERLFISxxxxxxxxxxxxxxxxxxxxxxxxxxPKDIQDCINRIQNAFASSMSNDLHIAMALDALSEPLKIMNDIMFTR
B8LQ17_______________YRSQLNYSKSQLENASERLFY-xxxxxxxxxxxxxxxxxxxxxxxxxxPEDIQKRINNIHNAFSSSMSNDLHIAMALDALSEPLKIMNDLMFTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain