SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68640

Length: 291 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene68640
CGTCGTGACCTTGGCTGTCTGCAACATTATGATTGAAGTGTACATGCAGAATGGGTGTATCGATCAGGCGGTGAAACTGTTTGGGGAAATGCCAGAACGAGATGTAATTTCATGGACTACAATGATTGTGGGACATGGACAGAATGGGCAAATTGATAAGGCCGTGGAGCTGTTTGAGAAAATTCCCAGAAGAGATGTGGTGTCATGGAGTGCTATGATTGCAGGATATGTACAAAATGGTTATTTTGAAGAAGCCATGGAGCTCTTTGGACAAATGCAGAAGACAGGTGT

Ace file of the UniGene sp_v1.1_unigene68640

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	2.0e-19	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.34101e-21	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast RNA processing	GO:0031425	Biological Process	1.34101e-21	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.34101e-21	72%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	1.34101e-21	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 96 - 644

Fln protein: VVTLAVCNIMIEVYMQNGCIDQAVKLFGEMPERDVISWTTMIVGHGQNGQIDKAVELFEKIPRRDVVSWSAMIAGYVQNGYFEEAMELFGQMQKTG

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCTGCAACATTATGATTGAAGTGTACATGCAGAATGGGTGTATCGATCAGGCGGTGAAACTGTTTGGGGAAATGCCAGAACGAGATGTAATTTCATGGACTACAATGATTGTGGGACATGGACAGAATGGGCAAATTGATAAGGCCGTGGAGCTGTTTGAGAAAATTCCCAGAAGAGATGTGGTGTCATGGAGTGCTATGATTGCAGGATATGTACAAAATGGTTATTTTGAAGAAGCCATGGAGCTCTTTGGACAAATGCAGAAGACAGGTGT

Fln Alignment:

sp_v1.1_unigene68640___TLAVCNI-----MIEVYMQNGCIDQAVKLFGEMP---------------------------------------ERDVISWTTMIVGHGQNGQIDKAVELFEKIPRRDVVSWSAMIAGYVQNGYFEEAMELFGQMQKTG
B8LLJ0_______________TMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain