SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68632

Length: 453 nt

UniGene Fasta

>sp_v1.1_unigene68632
CGTCGTGACCTTGGCTGTCACTCAACTTTTCACTGGCGGGAGAGAAACTAGATTGAAGAGAGTTATGAAGGAGGGTTTTACCAGTAGAAAACCCAATATCCAACCCCATCCAATCTTCAGTCCATTGACGGTGACAAGGCATGGTGTTGGCATTTGATGACTTTGAAAGGCCATTTATCATAGCAAAGGAGCAAGAGCAGAATGACTTAGATAATCCGAAGGCCAACATTGCGGCTCCCATGGCCATCGCGAGAATCCTCAACATCTCACTCGGCCCTAAGGGAATAGGAAAGATGCTCCAGAGCCCAATGGTGATGTCGCCCTGATTCATGACCAAGGCCATCACTGGATGAAAGACAACTAATAAAGCAGGTATGGTAGTCACCTATTAAGTATTGTAACCATATTACCACTTGAATTAAATTGGATCTATTATAATGTTAATAATTAAAG

Ace file of the UniGene sp_v1.1_unigene68632

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chaperonin containing t-complex protein 1, epsilon subunit, tcpe, putative; K09497 T-complex protein 1 subunit epsilon	-	-	5.0e-11	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	t complex protein	-	-	9.50417e-12	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQY7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 427 aas, your sequence is shorter than subject: 62 - 535

Fln protein: MVLAFDDFERPFIIAKEQEQNDLDNPKANIAAPMAIARILNISLGPKGIGKMLQSPMVMSP*

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTCACTGGCGGGAGAGAAACTAGATTGAAGAGAGTTATGAAGGAGGGTTTTACCAGTAGAAAACCCAATATCCAACCCCATCCAATCTTCAGTCCATTGACGGTGACAAGGC_-_ATGGTGTTGGCATTTGATGACTTTGAAAGGCCATTTATCATAGCAAAGGAGCAAGAGCAGAATGACTTAGATAATCCGAAGGCCAACATTGCGGCTCCCATGGCCATCGCGAGAATCCTCAACATCTCACTCGGCCCTAAGGGAATAGGAAAGATGCTCCAGAGCCCAATGGTGATGTCGCCCTGATTCATGACCAAGGCCATCACTGGATGAAAGACAACTAATAAAGCAGGTATGGTAGTCACCTATTAAGTATTGTAACCATATTACCACTTGAATTAAATTGGATCTATTATAATGTTAATAATTAAAG

Fln Alignment:

sp_v1.1_unigene68632___MVLAFDDFERPFIIAKEQEQND----LDNPKANIAAPMAIARILNISLGPKGIGKMLQSP
B8LQY7_______________MALAFDEFGRPFIIIREQEQKTRIRGLDAQKANISAARAVARILRTSLGPKGMDKMLQSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain