SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68576

Length: 474 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene68576
CACAATGAATGAAGATCAAAGGCCCCAGTTATTTGCATCTGCTGTACACGTCCTGACCATGGCTGAAAATGAATGGGAAGAGCAGATCAAGAGGCTTCATTTGCTACTAACAGTCAAGGAATCTGCTATGGATGTTCCATCCAACTTAGAAGCACGGCGCCGTATTGCCTTCTTTACGAATTCTCTGTTTATGGATATGCCCAATGCTCCTAAAGTCCGAAATATGCTGCCATTCAGTGTGATGACTATTTCTGGTTGTCTAGCTGTCTAGACTCTAGACTCTATATTGATTGCCTGTTTATGAAATAACTATCTACTTGTTATACCTACAACCCATGGCCAAAGAGAGACATACCTTAGTAGAGAAGGGATAAATAGCATCTCTTTGTTTCACTACATTCTTGATACTGAAATTTATCCTTTTTCAGCCTTTGAATTTATTTTCACTAAACATTCTTCTTCAAGAAAACTCAG

Ace file of the UniGene sp_v1.1_unigene68576 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucan synthase-like 2 (Fragment) n=1 Tax=Hordeum vulgare RepID=C6GFB2_HORVU	-	-	3.0e-25	67%
FL-Next	sp=Callose synthase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Blast2go	transferring glycosyl	-	-	5.19154e-26	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen wall assembly	GO:0010208	Biological Process	5.19154e-26	80%
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	5.19154e-26	80%
Blast2go	microsporogenesis	GO:0009556	Biological Process	5.19154e-26	80%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	5.19154e-26	80%
Blast2go	pollen germination	GO:0009846	Biological Process	5.19154e-26	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 48	IPR003440	-	5.19154e-26	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q3B724

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 770 aas, your sequence is shorter than subject: 90 - 1923

Fln protein: TMNEDQRPQLFASAVHVLTMAENEWEEQIKRLHLLLTVKESAMDVPSNLEARRRIAFFTNSLFMDMPNAPKVRNMLPFSVMTISGCLAV*

Protein Length: 91

Fln nts: CACAATGAATGAAGATCAAAGGCCCCAGTTATTTGCATCTGCTGTACACGTCCTGACCATGGCTGAAAATGAATGGGAAGAGCAGATCAAGAGGCTTCATTTGCTACTAACAGTCAAGGAATCTGCTATGGATGTTCCATCCAACTTAGAAGCACGGCGCCGTATTGCCTTCTTTACGAATTCTCTGTTTATGGATATGCCCAATGCTCCTAAAGTCCGAAATATGCTGCCATTCAGTGTGATGACTATTTCTGGTTGTCTAGCTGTCTAGACTCTAGACTCTATATTGATTGCCTGTTTATGAAATAACTATCTACTTGTTATACCTACAACCCATGGCCAAAGAGAGACATACCTTAGTAGAGAAGGGATAAATAGCATCTCTTTGTTTCACTACATTCTTGATACTGAAATTTATCCTTTTTCAGCCTTTGAATTTATTTTCACTAAACATTCTTCTTCAAGAAAACTCAG

Fln Alignment:

sp_v1.1_unigene68576___NEDQRPQLFAS-----AVHVLTMAENEWEEQIKRLHLLLTVKESAMDVPSNLEARRRIAFFTNSLFMDMPNAPKVRNMLPFSVMT
Q3B724_______________NKESGRQLFAGTDAKPAILFPPVATAQWHEQISRLHLLLTVKESAMDVPTNLEAQRRIAFFTNSLFMDMPRAPRVRNMLSFSVLT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
231		66		33	0.997459
234		66		33	0.997459
400		66		33	0.997476
403	33		33	33	0.997753
404		66	33		0.997452
406	33		33	33	0.997753
407		33		66	0.997452
408	33		33	33	0.997752
409	33		33	33	0.997752
412		33	66		0.997453
413		66	33		0.997454
416	33	33		33	0.997751

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain