SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68571

Length: 538 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene68571
ATTGTGGATCCAAGTATAGCAAACAGTTTTTTGGTTCTAGTACGATCTTTTATTCATTATGCCCCACTGTTAACAACACCGTGGGCTTCACAAACTTGGATGTCCAGACTCCGAACGCTTTCGACAAGAAATACTACGAGAATGTGCAGAAGAACCAGGTGCTATTCACCTCCGACCAGAGTCTCTACACCGAGTCCGATAGTGCAGAAATCGTTGACAGCTTTGCATCCAGCCAGACCGTGTTCTTCAAAAAGTTTGTACATGGAATGCATAAAATGGGGCAGTTGGACGTTCTAACGGGCAAGAAGGGAGAGATCCGTACCACATGCTCCGTTCCGAATCCGACTTCTTCAGCCTTTGAAGAAGTTTTTGAAGAAGTTATCGAGTCCGTCACCCACTCAGAGCTTTAGCTTGTAGTTTAAACTTAGGAATAAGGTTAATGATGTTATGTCTTTCCTTTCTTAGTGTAAGATCGGCCACACTTAACTGGATTGCAGATTTGCTCCCAATGTTTATGTTATTTTGACATGATAAATAT

Ace file of the UniGene sp_v1.1_unigene68571

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase-like protein (Fragment) n=14 Tax=Picea sitchensis RepID=E0Z9M2_PICSI	-	-	1.0e-34	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	peroxidase-like protein	-	-	3.38256e-35	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU81

Fln msg: your sequence is shorter than subject: 136 - 389

Fln protein: CGSKYSKQFFGSSTIFYSLCPTVNNTVGFTNLDVQTPNAFDKKYYENVQKNQVLFTSDQSLYTESDSAEIVDSFASSQTVFFKKFVHGMHKMGQLDVLTGKKGEIRTTCSVPNPTSSAFEEVFEEVIESVTHSEL*

Protein Length: 137

Fln nts: ATTGTGGATCCAAGTATAGCAAACAGTTTTTTGGTTCTAGTACGATCTTTTATTCATTATGCCCCACTGTTAACAACACCGTGGGCTTCACAAACTTGGATGTCCAGACTCCGAACGCTTTCGACAAGAAATACTACGAGAATGTGCAGAAGAACCAGGTGCTATTCACCTCCGACCAGAGTCTCTACACCGAGTCCGATAGTGCAGAAATCGTTGACAGCTTTGCATCCAGCCAGACCGTGTTCTTCAAAAAGTTTGTACATGGAATGCATAAAATGGGGCAGTTGGACGTTCTAACGGGCAAGAAGGGAGAGATCCGTACCACATGCTCCGTTCCGAATCCGACTTCTTCAGCCTTTGAAGAAGTTTTTGAAGAAGTTATCGAGTCCGTCACCCACTCAGAGCTTTAG___CTTGTAGTTTAAACTTAGGAATAAGGTTAATGATGTTATGTCTTTCCTTTCTTAGTGTAAGATCGGCCACACTTAACTGGATTGCAGATTTGCTCCCAATGTTTATGTTATTTTGACATGATAAATAT

Fln Alignment:

sp_v1.1_unigene68571___YSLCPTVNNTVGFTNLDVQTPNAFDKKYYENVQKNQVLFTSDQSLYTES-DSAEIVDSFASSQTVFFKKFVHGMHKMGQLDVLTGKKGEIRTTCSVPNPT
A9NU81_______________YSICPAVNDTVNTADLDVLTPNYFDNSYYVNVQRNQALFTSDQSLYTDSTDSGDIVDSFASKKTVFFKKFVLGMVKMGQLDVLTGSEGEIRSKCSVPNPT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
204		33		66	0.997458
206		66		33	0.997458
207	66	33			0.997458
209	66			33	0.997461
210	66		33		0.997464
214		33	66		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain