SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68411

Length: 358 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene68411
CGTCGTGACCTTGGCTGTCACTCATTGATTTGGAGCTAAAGCTTGTCGCTGATGTGGGAATTGTGGGGGTCCCAAATGCTGGAAAAAGCACTTTACTCAGTGTTATAAGTGCAGCTCAGCCAACTATTGCAAACTACCCTTTTACAACCCTATTGCCCAATCTTGGTGTGGTATCGCTAGATTATGATTCCACTATGGTTGTAGCAGATTTGCCAGGTCTTCTTGAAGGTGCACATCGTGGCTATGGCTTAGGCCATGAGTTTTTGCGGCACAGTGAAAGATGCCATGTTCTGATACATGTTGTGGATGGCACAAGCCCCCAGGCTGAGTACGAGTTTGATGCAGTCCGTTTGGAGCT

Ace file of the UniGene sp_v1.1_unigene68411

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative GTP-binding protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7EZT3_ORYSJ	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	gtp1 obg family protein	-	-	90%

Source	ECs	Term	Type	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	90%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	90%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	90%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	90%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	90%
Blast2go	response to light stimulus	GO:0009416	Biological Process	90%
Blast2go	GTPase activity	GO:0003924	Molecular Function	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACC2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 201 aas, your sequence is shorter than subject: 118 - 369

Fln protein: S*PWLSLIDLELKLVADVGIVGVPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSLDYDSTMVVADLPGLLEGAHRGYGLGHEFLRHSERCHVLIHVVDGTSPQAEYEFDAVRLE

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGATTTGGAGCTAAAGCTTGTCGCTGATGTGGGAATTGTGGGGGTCCCAAATGCTGGAAAAAGCACTTTACTCAGTGTTATAAGTGCAGCTCAGCCAACTATTGCAAACTACCCTTTTACAACCCTATTGCCCAATCTTGGTGTGGTATCGCTAGATTATGATTCCACTATGGTTGTAGCAGATTTGCCAGGTCTTCTTGAAGGTGCACATCGTGGCTATGGCTTAGGCCATGAGTTTTTGCGGCACAGTGAAAGATGCCATGTTCTGATACATGTTGTGGATGGCACAAGCCCCCAGGCTGAGTACGAGTTTGATGCAGTCCGTTTGGAGCT

Fln Alignment:

sp_v1.1_unigene68411___VGIVGVPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSLDYDSTMVVADLPGLLEGAHRGYGLGHEFLRHSERCHVLIHVVDGTSP
D5ACC2_______________VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVIRY-RGAKLQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
12			33	66	0.997452
73			66	33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain