SustainPineDB

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Assembly info
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SNPs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68281

Length: 395 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene68281
CGTCGTGACCTTGGCTGTCACTCAGCTTCCGCCTGATGTTGCCCGGCTACTTCCCGAGAATCGCCTTCTGACCGAGAATGAATGGCGAGGAATCGGGGTTCAGCAGTCTCGTGGGTGGGTGCACTATGCGTCGTGACCTTGGCTGTCACTCATATGTTATTCAGAAGGCCTTTGAATTACGAGCAAAACCACCAGCACCCTGAGCCACACATTATGTTATTCAGAAGGCCTTTGAACTGCCAGCCAAACCACCAGCCACAAGCACATCATCCAACATAGGCTGCGGGGATTCGAGCCTGATGGTTATGCACTGTGGCCAGCATTGATATTAAGGCTCTAAGGAGGGTGGAGTAATGGCTATTTTTGTCAAGCAAGATGGTGAAGTTTTAGCTGAG

Ace file of the UniGene sp_v1.1_unigene68281

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-dependent kinases regulatory subunit 1 n=10 Tax=Magnoliophyta RepID=CKS1_ARATH	-	-	4.0e-16	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	cyclin-dependent kinases regulatory subunit	-	-	3.26173e-31	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitotic cell cycle	GO:0000278	Biological Process	3.26173e-31	96%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	3.26173e-31	96%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	3.26173e-31	96%
Blast2go	protein binding	GO:0005515	Molecular Function	3.26173e-31	96%
Blast2go	cytoplasm	GO:0005737	Cellular Component	3.26173e-31	96%
Blast2go	nucleus	GO:0005634	Cellular Component	3.26173e-31	96%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACV7

Fln msg: Separated hits, possible frame ERROR between 130 and 154, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning,

Fln protein: VVTLAVTQLPPDVARLLPENRLLTENEWRGIGVQQSRGWVHYxxxxxxxxxMLFRRPLNYEQNHQHPEPHIMLFRRPLNCQPNHQPQAHHPT*

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTCCGCCTGATGTTGCCCGGCTACTTCCCGAGAATCGCCTTCTGACCGAGAATGAATGGCGAGGAATCGGGGTTCAGCAGTCTCGTGGGTGGGTGCACTATGCxxxxxxxxxxxxxxxxxxxxxxxxTATGTTATTCAGAAGGCCTTTGAATTACGAGCAAAACCACCAGCACCCTGAGCCACACATTATGTTATTCAGAAGGCCTTTGAACTGCCAGCCAAACCACCAGCCACAAGCACATCATCCAACATAGGCTGCGGGGATTCGAGCCTGATGGTTATGCACTGTGGCCAGCATTGATATTAAGGCTCTAAGGAGGGTGGAGTAATGGCTATTTTTGTCAAGCAAGATGGTGAAGTTTTAGCTGAG

Fln Alignment:

sp_v1.1_unigene68281___QLPPDVARLLPENRLLTENEWRGIGVQQSRGWVHYAxxxxxxxxMLFRRPLNYEQNHQHPEPHIMLFRRPLNCQPNHQPQAHH
D5ACV7_______________ELPPDVAQFLPKNRLLTENEWRGIGVQQSRGWVHYAxxxxxxxxMLFRRPLNYEQNHQHPEAHIMLFRRPLNHQPNHQPEAHH

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
132	33	66			0.997476
133			66	33	0.997476
135		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain