SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene68001

Length: 330 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene68001
CGTCGTGACCTTGGCTGTCACTCAAAGTTTATTGGTGCGGTAGATCTGGACGTGGACGTTGGCTGTCAGTCACTTTTCAATAAGCTTACTCAGACTTGCTATGCCAAATGCATTCCAAGGAGATATAAAGAAGGTGAACTGAACATAGGAGAATGCAGTTGTGTTGATCGCTGTGTTGCCAAATACTCACAGGTTACTGCTATTATAGGGCGAGTTCTAGTTCAGGCAGGCCACATATATAAATTCAACTACCAGTCAAATGTCTTGGCCAATTGATAATTTAGGAGATGGGAACATCCATTTTATATTACGAGAGATATTATGTGTGTT

Ace file of the UniGene sp_v1.1_unigene68001

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small zinc finger-like protein n=2 Tax=Pinaceae RepID=Q9XH47_PINTA	-	-	4.0e-16	77%
FL-Next	tr=Small zinc finger-like protein; Pinus taeda (Loblolly pine).	-	-	0.0	77%
Blast2go	mitochondrial import inner membrane translocase subunit tim10	-	-	8.31405e-16	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	8.31405e-16	83%
Blast2go	mitochondrial intermembrane space	GO:0005758	Cellular Component	8.31405e-16	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q9XH47

Fln msg: atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning,

Fln protein: RRDLGCHSKFIGAVDLDVDVGCQSLFNKLTQTCYAKCIPRRYKEGELNIGECSCVDRCVAKYSQVTAIIGRVLVQAGHIYKFNYQSNVLAN*

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTTATTGGTGCGGTAGATCTGGACGTGGACGTTGGCTGTCAGTCACTTTTCAATAAGCTTACTCAGACTTGCTATGCCAAATGCATTCCAAGGAGATATAAAGAAGGTGAACTGAACATAGGAGAATGCAGTTGTGTTGATCGCTGTGTTGCCAAATACTCACAGGTTACTGCTATTATAGGGCGAGTTCTAGTTCAGGCAGGCCACATATATAAATTCAACTACCAGTCAAATGTCTTGGCCAATTGA___TAATTTAGGAGATGGGAACATCCATTTTATATTACGAGAGATATTATGTGTGTT

Fln Alignment:

sp_v1.1_unigene68001___LFNKLTQTCYAKCIPRRYKEGELNIGECSCVDRCVAKYSQVTAIIGRVL
Q9XH47_______________LFNKLTKTCFDKCIERRYKESELNMGECSCVDRCVAKYWQVTSIVGQLL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain