SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67726

Length: 381 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene67726
CGTCGTGACCTTGGCTGTCACTCAATTTTGTTTATGGCAAGAGCGAGGCCAATGATTCTAACGCTTTCGGAGGAAAAACTGAAGCGTAATGTGGATTTTTTGGTGAATACTGCGAGGCTTCAATTGGCTGATATTGTGAAGTACCCAAATCTGTTTGGAAGCAGCTTAGAGAGAAGGCTGATTCCTCGGTATATGGTGCTGGAGGCAATGAAGTTCAAGCAATTGCAAGGGTCGAAAAGAGAAAGGCGTTTTGCGGTTATTCTTACGATGACAGAACAACGTTTCTGGAATATATTCATTCAAATGCCGAATTCTCCTCAGTTCTCCAGGATATTTACCGCAGAGGGAAAGCTGGAGAGTTAGTGATTGGCAAGGAGACAT

Ace file of the UniGene sp_v1.1_unigene67726

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mTERF domain containing protein	-	-	4.0e-14	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	unknown [Picea sitchensis]	-	-	4.48618e-26	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochodrial transcription termination factor-related	IPR003690	-	4.48618e-26	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC01

Fln msg: your sequence is shorter than subject: 121 - 359

Fln protein: RRDLGCHSILFMARARPMILTLSEEKLKRNVDFLVNTARLQLADIVKYPNLFGSSLERRLIPRYMVLEAMKFKQLQGSKRERRFAVILTMTEQRFWNIFIQMPNSPQFSRIFTAEGKLES*

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTTTATGGCAAGAGCGAGGCCAATGATTCTAACGCTTTCGGAGGAAAAACTGAAGCGTAATGTGGATTTTTTGGTGAATACTGCGAGGCTTCAATTGGCTGATATTGTGAAGTACCCAAATCTGTTTGGAAGCAGCTTAGAGAGAAGGCTGATTCCTCGGTATATGGTGCTGGAGGCAATGAAGTTCAAGCAATTGCAAGGGTCGAAAAGAGAAAGGCGTTTTGCGGTTATTCTTACGATGACAGAACAACGTTTCTGGAATATATTCATTCAAATGCCGAATTCTCCTCAGTTCTCCAGGATATTTACCGCAGAGGGAAAGCTGGAGAGTTAG___TGATTGGCAAGGAGACAT

Fln Alignment:

sp_v1.1_unigene67726___ILFMARARPMILTLSEEKLKRNVDFLVNTARLQLADIVKYPNLFGSSLERRLIPRYMVLEAMKFKQLQGSKRERRFAVILTMTEQRFWNIFIQMPNSPQFSRIFT---AEGKLES
D5AC01_______________VLYLASQRPLILTLSEEKLKRNVDFLVKTVGLPLADIAKYPDLFANSLETRMIPRYRVLEAIKSMQVQASKRRMCFPKIIGLTESRFLEVYVN--SNAEFSSVLQDIYCRGKLES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain