SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67723

Length: 340 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene67723
CGTCGTGACCTTGGCTGTCACTCAGCTTTATATGTATTTGAATGGATGAGAAACCATGAGGATCACAAGCCAAATGCTCAAACGATTGCACTAATGATCAGGACTTTATGCCGAGAAGCGCAATGCTCCAAAGCAACTGATTTATTTCACAAACTTCGGCTAGAAGGGTATTCTATAGATGCCTATGCATACACCTCTTTAATTTCTACTTATTCCCAAAGTGGCATGTACAGAGAAGCGATTTATTTGTTCAAGAGAATGGTGGAAGATGGATGCGAACCTAATATTGTCACCTACAATGTAATGCTTGGTGTATATGGCAAGATGGGTAATTCTTGGA

Ace file of the UniGene sp_v1.1_unigene67723

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RY68_RICCO	-	-	1.0e-24	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.8186e-24	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.8186e-24	63%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	2.8186e-24	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXP3

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 113 - 278

Fln protein: RRDLGCHSALYVFEWMRNHEDHKPNAQTIALMIRTLCREAQCSKATDLFHKLRLEGYSIDAYAYTSLISTYSQSGMYREAIYLFKRMVEDGCEPNIVTYNVMLGVYGKMGNSW

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTATATGTATTTGAATGGATGAGAAACCATGAGGATCACAAGCCAAATGCTCAAACGATTGCACTAATGATCAGGACTTTATGCCGAGAAGCGCAATGCTCCAAAGCAACTGATTTATTTCACAAACTTCGGCTAGAAGGGTATTCTATAGATGCCTATGCATACACCTCTTTAATTTCTACTTATTCCCAAAGTGGCATGTACAGAGAAGCGATTTATTTGTTCAAGAGAATGGTGGAAGATGGATGCGAACCTAATATTGTCACCTACAATGTAATGCTTGGTGTATATGGCAAGATGGGTAATTCTTGGA

Fln Alignment:

sp_v1.1_unigene67723___EDHKPNAQTIALMIRTLCREAQCSKATDLFHKLRLEGYSIDAYAYTSLISTYSQSGMYREAIYLFKRMVEDGCEPNIVTYNVMLGVYGKMG
A9NXP3_______________EGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain