SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67521

Length: 295 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene67521
CTTCCAGCCCAATGAGGTCCAGGAACCAATAAGCAGATTAGTTGGGGAACGCGATTCAAAAGATTTGCAAAGACTTTTACCAGAAATTCCATTGTGGGTCAAAAATCCTGATTATGATAGAGTTAATTGGATCAATAGGTTCCTCTTCGAGATGTGGCCTTATCTTGATAAGGCAATCTGTAAAATGATAAGGGACACGACAATGCGCACCGTTGACCAATATATTGGCCAATATAAGATAGAATCTATTGAATTTGAAACTCTTACATTGGGGACCATGCAGCCTACACTACAA

Ace file of the UniGene sp_v1.1_unigene67521

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plant synaptotagmin n=2 Tax=Selaginella moellendorffii RepID=D8QNF2_SELML	-	-	5.0e-31	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	plant synaptotagmin	-	-	1.24483e-35	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane repair	GO:0001778	Biological Process	1.24483e-35	79%
Blast2go	response to cold	GO:0009409	Biological Process	1.24483e-35	79%
Blast2go	spread of virus in host, cell to cell	GO:0046740	Biological Process	1.24483e-35	79%
Blast2go	response to virus	GO:0009615	Biological Process	1.24483e-35	79%
Blast2go	endocytosis	GO:0006897	Biological Process	1.24483e-35	79%
Blast2go	vacuole	GO:0005773	Cellular Component	1.24483e-35	79%
Blast2go	recycling endosome	GO:0055037	Cellular Component	1.24483e-35	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.24483e-35	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRA0

Fln msg: Distance to subject end: 408 aas, your sequence is shorter than subject: 98 - 536

Fln protein: FQPNEVQEPISRLVGERDSKDLQRLLPEIPLWVKNPDYDRVNWINRFLFEMWPYLDKAICKMIRDTTMRTVDQYIGQYKIESIEFETLTLGTMQPTLQ

Protein Length: 99

Fln nts: CTTCCAGCCCAATGAGGTCCAGGAACCAATAAGCAGATTAGTTGGGGAACGCGATTCAAAAGATTTGCAAAGACTTTTACCAGAAATTCCATTGTGGGTCAAAAATCCTGATTATGATAGAGTTAATTGGATCAATAGGTTCCTCTTCGAGATGTGGCCTTATCTTGATAAGGCAATCTGTAAAATGATAAGGGACACGACAATGCGCACCGTTGACCAATATATTGGCCAATATAAGATAGAATCTATTGAATTTGAAACTCTTACATTGGGGACCATGCAGCCTACACTACAA

Fln Alignment:

sp_v1.1_unigene67521___FQPNEVQEPISRLVGERDSKDLQRLLPEIPLWVKNPDYDRVNWINRFLFEMWPYLDKAICKMIRDTTMRTVDQYIGQYKIESIEFETLTLGTMQPTLQ
B8LRA0_______________FQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHEMWPYLDKAICQIIRDKTKPMIEQYVGKFKIESIEIETLTLGTLPPTLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain