SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67456

Length: 358 nt

UniGene Fasta

>sp_v1.1_unigene67456
ATGGGGGTAACAGCCATCTATTGGTCTAATAGTGCTTTTGGCAGTTTGAATCTATTGTCCAGTGCTTTTGGCAACTTGAATCTGCAGCAATGAAGGAATACTGTCCAGTGCTTTGGCAACTTGAATCTGCAGCAAAGAAGGAATGTTATTCCTCATGTTTTCATCTTCTAACAAATAGATTGAAGAATTTTGGCAAAGTTACAGTCGATGATTTCAAATGGCTAAATTCTTCTTATTGTCCAGTTCTTTGGCAGCTTGAATCTGTAGCAATGAAGGAATATTATTTTGAGGTAGATCATCCAACTAATTTGGCAACTGGCTTCCAATTTGAAATATCGAAACTCAACTGCTTCTCTCT

Ace file of the UniGene sp_v1.1_unigene67456

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase n=1 Tax=Populus trichocarpa RepID=B9IC41_POPTR	-	-	2.0e-12	50%
FL-Next	sp=Alpha-1,4-galacturonosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Blast2go	transferring glycosyl	-	-	8.60462e-13	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	8.60462e-13	61%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		8.60462e-13	61%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		8.60462e-13	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	8.60462e-13	61%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	8.60462e-13	61%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	8.60462e-13	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LE59

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 195 aas, your sequence is shorter than subject: 118 - 673

Fln protein: GGNSHLLV**CFWQFESIVQCFWQLESAAMKEYCPVLWQLESAAKKECYSSCFHLLTNRLKNFGKVTVDDFKWLNSSYCPVLWQLESVAMKEYYFEVDHPTNLATGFQFEISKLNCFS

Protein Length: 119

Fln nts: ATGGGGGTAACAGCCATCTATTGGTCTAATAGTGCTTTTGGCAGTTTGAATCTATTGTCCAGTGCTTTTGGCAACTTGAATCTGCAGCAATGAAGGAATACTGTCCAGTGCTTTGGCAACTTGAATCTGCAGCAAAGAAGGAATGTTATTCCTCATGTTTTCATCTTCTAACAAATAGATTGAAGAATTTTGGCAAAGTTACAGTCGATGATTTCAAATGGCTAAATTCTTCTTATTGTCCAGTTCTTTGGCAGCTTGAATCTGTAGCAATGAAGGAATATTATTTTGAGGTAGATCATCCAACTAATTTGGCAACTGGCTTCCAATTTGAAATATCGAAACTCAACTGCTTCTCTCT

Fln Alignment:

sp_v1.1_unigene67456___FHLLTNRLKNFGKVT-----------------VDDFKWLNSSYCPVLWQLESVAMKEYYFEVDHPTNLATGFQFEISK
Q9LE59_______________FHLVTDKL-NFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMREYYFKADHPTSGSSNLKYRNPK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
237		33		66	0.997476
268		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain