SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67376

Length: 297 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene67376
CGTCGTGACCTTGGCTGTCACTCAGGGTTGTATGGGAGGAAGTCAAAAAGTTGTGCTGGGTGGCAGGGCCTATGATTGGAGTGAATCTGTTGCAGTATTGTTTGTCGATGATCTCGGTCATGTTCGTGGGGCATTTGGGAGAGCTGGCACTTTCCAGTGCTGCAATTGCTACTTCTTTTGCAGTTGTGACAGGGTTTAGTGTGCTGATGGGAATGGCAAGTGCATTAGAGACACTTTGTGGACAAGCCTATGGAGCAAAGCAGTATCATTTACTTGGGATTCAACTGCAGAGAGCAA

Ace file of the UniGene sp_v1.1_unigene67376

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[V] COG0534 Na+-driven multidrug efflux pump	-	-	8.0e-13	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	protein	-	-	1.41911e-31	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	1.41911e-31	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.41911e-31	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Multi antimicrobial extrusion protein	IPR002528	-	1.41911e-31	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVJ0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 376 aas, your sequence is shorter than subject: 98 - 503

Fln protein: S*PWLSLRVVWEEVKKLCWVAGPMIGVNLLQYCLSMISVMFVGHLGELALSSAAIATSFAVVTGFSVLMGMASALETLCGQAYGAKQYHLLGIQLQRA

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTGTATGGGAGGAAGTCAAAAAGTTGTGCTGGGTGGCAGGGCCTATGATTGGAGTGAATCTGTTGCAGTATTGTTTGTCGATGATCTCGGTCATGTTCGTGGGGCATTTGGGAGAGCTGGCACTTTCCAGTGCTGCAATTGCTACTTCTTTTGCAGTTGTGACAGGGTTTAGTGTGCTGATGGGAATGGCAAGTGCATTAGAGACACTTTGTGGACAAGCCTATGGAGCAAAGCAGTATCATTTACTTGGGATTCAACTGCAGAGAGCAA

Fln Alignment:

sp_v1.1_unigene67376___VWEEVKKLCWVAGPMIGVNLLQYCLSMISVMFVGHLGELALSSAAIATSFAVVTGFSVLMGMASALETLCGQAYGAKQYHLLGIQLQRA
A9NVJ0_______________IWVESKKLWRIAGPAIFTRLTTYGTNLVTQAFAGHLGDLELAAITISTTVIVGLSFGLLLGMGSALETMCGQAFGARQYDMLGVYLQRS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
18	33	66			0.997459

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain