SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67372

Length: 473 nt

UniGene Fasta

>sp_v1.1_unigene67372
ATGGGGAGTTGGCTGTGCTGGGCGAAGTGGAGGAAGAGGAGGAGCAGCAGCAACTACAAGACGAAGAGTTTGAGCAGCAGACCATCCGTTCATCATGGGGCGTATGCACAGTCGAGGAAAAGGTATTTCCTCTTCGGCACTACCGTACAAGAGGACTCCCCCAAGTTGGTTGAAGATTTCATCTCAAGATGTCGAAGATAATATTTGCAAGTTTGCCAAGAGAGGTTTGACGCCATCACAAATTGGTGTGATTCTTCGTGACTTGGCTGTCATTGCACTCTCGTGGCTTAAGATTTTTCTCATCATTGTGAACAACAATTATGGAGTCATTTCTTATGTGGGGTATTGCAAGAGCTACTGATTGTTGCTGTAGAAGCTGATTAGACTTTTACAGAAGTACATCAATTATGTTCACCGGATTTTAGTGTTCCTTGTTTTAAGTCTTGACAATTTCGGAGTATTGAATGTTGGGG

Ace file of the UniGene sp_v1.1_unigene67372

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S13, putative n=2 Tax=Ricinus communis RepID=B9R9P3_RICCO	-	-	4.0e-24	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	40s ribosomal protein	-	-	1.28446e-24	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S13/S15, N-terminal	IPR012606	-	1.28446e-24	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRB2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 25 aas, your sequence is shorter than subject: 89 - 151

Fln protein: MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKRGLTPSQIGVILRDLAVIALSWLKIFLIIVNNNYGVISYVGYCKSY*

Protein Length: 90

Fln nts: ATGGGGAGTTGGCTGTGCTGGGCGAAGTGGAGGAAGAGGAGGAGCAGCAGCAACTACAAGACGAAGAGTTTGAGCAGCAGACCATCCGTTCATC_-_ATGGGGCGTATGCACAGTCGAGGAAAAGGTATTTCCTCTTCGGCACTACCGTACAAGAGGACTCCCCCAAGTTGGTTGAAGATTTCATCTCAAGATGTCGAAGATAATATTTGCAAGTTTGCCAAGAGAGGTTTGACGCCATCACAAATTGGTGTGATTCTTCGTGACTTGGCTGTCATTGCACTCTCGTGGCTTAAGATTTTTCTCATCATTGTGAACAACAATTATGGAGTCATTTCTTATGTGGGGTATTGCAAGAGCTACTGATTGTTGCTGTAGAAGCTGATTAGACTTTTACAGAAGTACATCAATTATGTTCACCGGATTTTAGTGTTCCTTGTTTTAAGTCTTGACAATTTCGGAGTATTGAATGTTGGGG

Fln Alignment:

sp_v1.1_unigene67372___MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKRGLTPSQIGVILRDLAVIA
A9NRB2_______________MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain