SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67352

Length: 283 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene67352
TGGTAGCGTGGCTGTGATTGCTACCTCCCACGATCACAGCTTCCTCGTCGAGCAAAAATTTAACTGATGCCATAGCTTCAGGAAACTACCCAGAATGGAAGCTCTTTATCCAGACAATGAATCCAGCGGATGAGGATAAGTTTGACTTTGATCCTCTAGATGATACTAAGATTTGGCCTGAGGATCTATTTCCCTTGCAGCCTGTGGCATCAGTTAAATCTTTGGTAGCGTGGCTGTGATCGTGGGAGGTAGCAATCACAGCCACGCTTCCATTCTGGGTAGT

Ace file of the UniGene sp_v1.1_unigene67352

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalase n=3 Tax=Picea sitchensis RepID=A9NUY8_PICSI	-	-	7.0e-14	67%
FL-Next	sp=Catalase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	at1g20620-like protein	-	-	1.31016e-13	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	1.31016e-13	92%
Blast2go	response to cold	GO:0009409	Biological Process	1.31016e-13	92%
Blast2go	cellular response to sulfate starvation	GO:0009970	Biological Process	1.31016e-13	92%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	1.31016e-13	92%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.31016e-13	92%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	1.31016e-13	92%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	1.31016e-13	92%
Blast2go	basic amino acid transmembrane transporter activity	GO:0015174	Molecular Function	1.31016e-13	92%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	1.31016e-13	92%
Blast2go	cell wall	GO:0005618	Cellular Component	1.31016e-13	92%
Blast2go	peroxisome	GO:0005777	Cellular Component	1.31016e-13	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.31016e-13	92%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.31016e-13	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.31016e-13	92%
Blast2go	vacuole	GO:0005773	Cellular Component	1.31016e-13	92%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	1.31016e-13	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.31016e-13	92%
Blast2go	apoplast	GO:0048046	Cellular Component	1.31016e-13	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Catalase, mono-functional, haem-containing	IPR018028	-	1.31016e-13	92%
Blast2go	Catalase-like domain	IPR020835	-	1.31016e-13	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUY8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 163 aas, your sequence is shorter than subject: 79 - 492

Fln protein: VAWL*LLPPTITASSSSKNLTDAIASGNYPEWKLFIQTMNPADEDKFDFDPLDDTKIWPEDLFPLQPVASVKSLVAWL*

Protein Length: 80

Fln nts: TGGTAGCGTGGCTGTGATTGCTACCTCCCACGATCACAGCTTCCTCGTCGAGCAAAAATTTAACTGATGCCATAGCTTCAGGAAACTACCCAGAATGGAAGCTCTTTATCCAGACAATGAATCCAGCGGATGAGGATAAGTTTGACTTTGATCCTCTAGATGATACTAAGATTTGGCCTGAGGATCTATTTCCCTTGCAGCCTGTGGCATCAGTTAAATCTTTGGTAGCGTGGCTGTGATCGTGGGAGGTAGCAATCACAGCCACGCTTCCATTCTGGGTAGT

Fln Alignment:

sp_v1.1_unigene67352___SSSSKNLTDAIASGNYPEWKLFIQTMNPAXXXXXXXXXXXXTKIWPEDLFPLQPV
A9NUY8_______________SHATKDLTDAIASGNYPEWKLYIQTMDPADEDKLDFDPLDDTKIWPEDLFPLQPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain