SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67317

Length: 402 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene67317
CGTCGTGACCTTGGCTGTCACTCAATTCTTACCCTTATTTGAACTTTTGTAACATTCGAACAAAATGGCGATGACAGTTTGCAAAGGAGGATGCAACTGCATGTACTGGTGGGTTTTCTGTATTGTTGTAATGCTGTGCAGCCTAGTAGTGGGTACTCAATGTGCAACCTTCAACGATTTCTTCTACCCCAATTGGGCAGCTGACCATGTCATGTCCCAAGGGGATTTGCTCCAGCTCAAGCTCGATCACACTTCTGGAGCAGGATTTGCTTCGAAGAGCACATACTTGTTCGGAAAAGCAACTGTGCAGATGAAGCTCGTTCCTGGCGACTCTGCTGGCACCGTTAATTCTTTCTATATGTCTTCACAAGGTGATCAGCATTTTGCATTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene67317

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9 precursor, putative (EC:2.4.1.207); K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207]	-	-	8.0e-21	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	4.2039e-45	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	8.0e-21	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	4.2039e-45	75%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	4.2039e-45	75%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	4.2039e-45	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD91

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 112 - 285

Fln protein: MAMTVCKGGCNCMYWWVFCIVVMLCSLVVGTQCATFNDFFYPNWAADHVMSQGDLLQLKLDHTSGAGFASKSTYLFGKATVQMKLVPGDSAGTVNSFYMSSQGDQHFALSDR

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTACCCTTATTTGAACTTTTGTAACATTCGAACAAA_-_ATGGCGATGACAGTTTGCAAAGGAGGATGCAACTGCATGTACTGGTGGGTTTTCTGTATTGTTGTAATGCTGTGCAGCCTAGTAGTGGGTACTCAATGTGCAACCTTCAACGATTTCTTCTACCCCAATTGGGCAGCTGACCATGTCATGTCCCAAGGGGATTTGCTCCAGCTCAAGCTCGATCACACTTCTGGAGCAGGATTTGCTTCGAAGAGCACATACTTGTTCGGAAAAGCAACTGTGCAGATGAAGCTCGTTCCTGGCGACTCTGCTGGCACCGTTAATTCTTTCTATATGTCTTCACAAGGTGATCAGCATTTTGCATTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene67317___MAMTVCKGGCNCMYWWVFCIVVMLCSLVVGTQCATFNDFFYPNWAADHVMSQGDLLQLKLDHTSGAGFASKSTYLFGKATVQMKLVPGDSAGTVNSFYMSSQGDQH
D5AD91_______________MAMASCEGCRICIYWWLINIIVMLCSFVVGSQCAAFNDFFYPSWALDHVMSQGDLLQLKLDHASGAGFASKSTYLFGKANVQIKLVPGDSAGTVTAFYMSSQGDQH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain