SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene67063

Length: 411 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene67063
TGCACGTGTGTACCGTGCCGATTTGGGAAGGAATAGAATCGCCGCTGTCAAAAGACTCCTGAAAGTTGATTCCAGGGTCTTCGGCGCAGAGTTATCTATCCTTTTGAGGCTGCGACGTCATCCAAATCTCGTGAATCTACTCGGAATATGCTCAGACCCAGATGACCAAATGATTGTCTTTGAATACGTCGGCAATGGGACCTTGTATAGTCGTCTGCACGAGAACCAGGGTGTCGCAGATCCACTATCTTGGGCTGCTCGGAAGGAGATAGCGCGTCAGGTTGCAGAGGCATTGAGATATCTTCATGAACAAGCAAATCCCCCGATAATTCACCGTGATGTTAAGTCTAAAAATGTCCTGCTGGAGAATGATTTCTCTGCTAAATTGGCTGATTTTGGGATAGCAAAATT

Ace file of the UniGene sp_v1.1_unigene67063

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine-threonine protein kinase, plant-type, putative	-	-	2.0e-28	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	receptor serine-threonine protein	-	-	2.47841e-28	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	2.47841e-28	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	2.47841e-28	66%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	2.47841e-28	66%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	2.47841e-28	66%
Blast2go	Protein kinase-like domain	IPR011009	-	2.47841e-28	66%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	2.47841e-28	66%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	2.47841e-28	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: Distance to subject end: 213 aas, your sequence is shorter than subject: 136 - 458

Fln protein: ARVYRADLGRNRIAAVKRLLKVDSRVFGAELSILLRLRRHPNLVNLLGICSDPDDQMIVFEYVGNGTLYSRLHENQGVADPLSWAARKEIARQVAEALRYLHEQANPPIIHRDVKSKNVLLENDFSAKLADFGIAK

Protein Length: 137

Fln nts: TGCACGTGTGTACCGTGCCGATTTGGGAAGGAATAGAATCGCCGCTGTCAAAAGACTCCTGAAAGTTGATTCCAGGGTCTTCGGCGCAGAGTTATCTATCCTTTTGAGGCTGCGACGTCATCCAAATCTCGTGAATCTACTCGGAATATGCTCAGACCCAGATGACCAAATGATTGTCTTTGAATACGTCGGCAATGGGACCTTGTATAGTCGTCTGCACGAGAACCAGGGTGTCGCAGATCCACTATCTTGGGCTGCTCGGAAGGAGATAGCGCGTCAGGTTGCAGAGGCATTGAGATATCTTCATGAACAAGCAAATCCCCCGATAATTCACCGTGATGTTAAGTCTAAAAATGTCCTGCTGGAGAATGATTTCTCTGCTAAATTGGCTGATTTTGGGATAGCAAAATT

Fln Alignment:

sp_v1.1_unigene67063___RVYRADL-GRNRIAAVKRLLK---VDSRVFGAELSILLRLRRHPNLVNLLGICSDPDDQMIVFEYVGNGTLYSRLHENQGVADPLSWAARKEIARQVAEALRYLHEQANPPIIHRDVKSKNVLLENDFSAKLADFGIAK
D5AAA3_______________RVYRGRLESTGQAVAVKQLDRNGVQGNREFLVEV-LMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGYHSKLSDFGLAK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
263			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain