SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66679

Length: 569 nt

Origin of reads: Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene66679 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S7K7_RICCO	-	-	83%
FL-Next	Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14	-	-	76%
Blast2go	jumonji domain protein	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	JmjC domain	IPR003347	-	0.0	86%
Blast2go	Transcription factor jumonji	IPR013129	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GUI6-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 506 aas, your sequence is shorter than subject: 189 - 897

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: SCGSLRSIRLESK*HCTAPRINASFEDGDISGVIVPWLYVGMCFSSFCWHVEDHHFYSLNYLHWGAPKVWYGVPGSAAVKFEHAMRKHLPDLFEEQPDLLQKLVTQLSPSILKSEGVPVYRCVQQAGEFVLTFPRAYHGGFNCGFNCAEAVNVAPVDWLPHGQHATELYQELCRKTTVSHDKLLLGTAR

Protein Length: 190

Fln nts: GAAGCTGCGGATCTCTACGCAGCATCAGGTTGGAATCTAAATAACATTGCACGGCTCCCAGGATCAATGCTTCTTTTGAAGATGGAGATATATCTGGAGTGATAGTTCCATGGCTGTACGTAGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAGGATCATCACTTTTACtCTTTGAACTATTTGCACTGGGGTGCTCCTAAGGTATGGTATGGTGTCCCAGGCTCTGCAGCAGTAAAGTTCGAACATGCAATGAGAAAGCATTTGCCAGATCTTTTTGAAGAGCAACCTGACCTGTTACAGAAGTTGGTGACTCAACTATCTCCTTCAATATTGAAGTCTGAGGGTGTGCCAGTTTACAGGTGTGTCCAGCAAGCGGGGGAGTTCGTACTTACTTTTCCTCGAGCATATCATGGAGGCTTTAACTGTGGTTTTAACTGTGCCGAAGCTGTAAATGTAGCACCTGTTGACTGGTTACCACATGGACAACATGCAACGGAGCTTTATCAAGAGCTGTGCCGCAAAACAACTGTATCACATGATAAGCTACTACTGGGGACTGCAAGG

Fln Alignment:

sp_v1.1_unigene66679___SFEDGDISGVIVPWLYVGMCFSSFCWHVEDHHFYSLNYLHWGAPKVWYGVPGSAAVKFEHAMRKHLPDLFEEQPDLLQKLVTQLSPSILKSEGVPVYRCVQQAGEFVLTFPRAYHGGFNCGFNCAEAVNVAPVDWLPHGQHATELYQELCRKTTVSHDKLLLGTA
Q8GUI6-2_____________AFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPGNHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain