SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66551

Length: 529 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene66551
CGTCGTGACCTTGGCTGTCACTCATCTCTGTATTGCCGCTGTTTCTGTCTCAATGATAATGATTGCAATGATTGGCCTCCTCTTCCTCCTATACCAGATAATCTAATAAACGAAGGTCAGACCTTTGAAGAAGAAATTCTGCAATTTGTAGATGTTCCTGATGGGAATATGGGGCGAGTTATAGGAAGGAAAGGATCATCAATTTTATCAATTAAAAAATCCTGCAAGGCTGAAATTTTCTTTGGAGGTCAAAAAGGCCCACCAGACAAGATGTTACCTAATCGAGGTTGATCAGTAGTTTGGTATTTGAATAGCAGATGTGTGTCCGTCTACGTTCATGTGTGTTCCAGACTGTTTTGAGAACTTGGGATGCCAGAGAATGCTGTCACATTGGACTGAAGGAATTCTCAAATACTGGGTATTTATGTCTATGTACATAATAGGATTGAGGTACAGCCCAAGCATACCAAGGATGTTTAGGCCTTCCAAAACCATTCGGGCTTTGTTGTGTCTATTTTAAATAAATGTC

Ace file of the UniGene sp_v1.1_unigene66551

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3'-5' exonuclease domain-containing protein-like n=1 Tax=Solanum tuberosum RepID=Q2V9B5_SOLTU	-	-	1.0e-20	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	9.50353e-27	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K Homology domain, type 1	IPR004088	-	9.50353e-27	74%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	9.50353e-27	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPY1

Fln msg: your sequence is shorter than subject: 97 - 317

Fln protein: RRDLGCHSSLYCRCFCLNDNDCNDWPPLPPIPDNLINEGQTFEEEILQFVDVPDGNMGRVIGRKGSSILSIKKSCKAEIFFGGQKGPPDKMLPNRG*

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTGTATTGCCGCTGTTTCTGTCTCAATGATAATGATTGCAATGATTGGCCTCCTCTTCCTCCTATACCAGATAATCTAATAAACGAAGGTCAGACCTTTGAAGAAGAAATTCTGCAATTTGTAGATGTTCCTGATGGGAATATGGGGCGAGTTATAGGAAGGAAAGGATCATCAATTTTATCAATTAAAAAATCCTGCAAGGCTGAAATTTTCTTTGGAGGTCAAAAAGGCCCACCAGACAAGATGTTACCTAATCGAGGTTGA___TCAGTAGTTTGGTATTTGAATAGCAGATGTGTGTCCGTCTACGTTCATGTGTGTTCCAGACTGTTTTGAGAACTTGGGATGCCAGAGAATGCTGTCACATTGGACTGAAGGAATTCTCAAATACTGGGTATTTATGTCTATGTACATAATAGGATTGAGGTACAGCCCAAGCATACCAAGGATGTTTAGGCCTTCCAAAACCATTCGGGCTTTGTTGTGTCTATTTTAAATAAATGTC

Fln Alignment:

sp_v1.1_unigene66551___LGCHSSLYCRCFCLNDNDCXXXXXXXXXXXXXXNEGQTFEEEILQFVDVPDGNMGRVIGRKGSSILSIKKSCKAEIFFGGQKGPPDKM
B8LPY1_______________LAVRGSLYCRCFCVNDNDCNDWPPLPPIPDNLIIEGQTLEEEILQSVDVPVGNMGRVIGKKGASILSIKKSGKAEIFFGGQKGPPDKI

SNPs (tot: 8)

Position	A %	C %	T %	Probability
126		33	66	0.997471
128	66		33	0.997464
129	66	33		0.997464
132	66		33	0.997464
135	66	33		0.997476
136	66	33		0.997476
146		33	66	0.997476
147	33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain