SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66540

Length: 370 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene66540
CGTCGTGACCTTGGCTGTCACTCAATCATTCAATCTCATATTATAATCGCCATTGAAGCTTATTTCCAGCATTGGATAAGATGAGCCATTGCAATCTGAGAACAAAAGTGGCAACCCCCTGTGCTGCTTGCAGGACGCTCAGAAGGCGGTGTGAGGACAAGTGTGTGCTGGCTCCTTACTTCCCACCAAATGATCCTCACAAGTTTACAACTGTGCACACAGTATATGGAGCTAGCAACATCATCAGGATTCTTCAGGATGTTGATGGCGAGCATAGAGATGACGCAGTGAGTAGCTTGGTGTATGAAGCAAGGTGAGGCTGTGGGATCTTGTCTATGGTTGTGCAGGCGCAGTCTTCCAGCTGCAGCAG

Ace file of the UniGene sp_v1.1_unigene66540

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain protein 1, putative n=1 Tax=Solanum demissum RepID=Q6L463_SOLDE	-	-	2.0e-24	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	lob domain protein 11	-	-	2.8945e-25	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTB0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 74 aas, your sequence is shorter than subject: 79 - 180

Fln protein: MSHCNLRTKVATPCAACRTLRRRCEDKCVLAPYFPPNDPHKFTTVHTVYGASNIIRILQDVDGEHRDDAVSSLVYEAR*

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATTCAATCTCATATTATAATCGCCATTGAAGCTTATTTCCAGCATTGGATAAG_-_ATGAGCCATTGCAATCTGAGAACAAAAGTGGCAACCCCCTGTGCTGCTTGCAGGACGCTCAGAAGGCGGTGTGAGGACAAGTGTGTGCTGGCTCCTTACTTCCCACCAAATGATCCTCACAAGTTTACAACTGTGCACACAGTATATGGAGCTAGCAACATCATCAGGATTCTTCAGGATGTTGATGGCGAGCATAGAGATGACGCAGTGAGTAGCTTGGTGTATGAAGCAAGGTGAGGCTGTGGGATCTTGTCTATGGTTGTGCAGGCGCAGTCTTCCAGCTGCAGCAG

Fln Alignment:

sp_v1.1_unigene66540___RTKVATPCAACRTLRRRCEDKCVLAPYFPPNDPHKFTTVHTVYGASNIIRILQDVDGEHRDDAVSSLVYEAR-------*GCGILSMVVQAQSS
A9NTB0_______________RDHAPSPCAACKILRRRCGEKCVLAPYFPSNDLHKFATAHRIFGASNIIKLLQELPAEGRTDAVSSMVYEANARLRDPLYGCAGIVFQMQSQLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain