SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66456

Length: 526 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene66456
CGTCGTGACCTTGGCTGTCACTCAATGATAAAAAGGTTTCCCAAGATCAAGTCTGTGTCACTTAAGGGGAAGCCCAGATTTGCAGATTTTAATTTGTTGCCACCAAATTGGGGGGCCCATCTCACTTCGTGGTGTTGGCTGTGACTCTGCTTATCCATTACTTGAGAGGTTGTACTTGAAGAGGATGACTATCACAGATTATGATCTCACATTGCTTGCAAATTCCTTCCTATATTTCAAGGAGCTTGTTATGGTTTGTTGTGATGGATTCAGCACAGGTGGCCTCGCTTCGATTGCAAGCAAATGCAGGTTCTATGCCATTATCTGTTTCTCTTTCAGTTACATATATAGTTGCATGAGTTTGGTTCTCAGATAGCTTTAAATTCAACTATTAATAGGTCTAGGAGAATGACTTTAACTTTTGGGTAATACAAACAGTTTTGTTGACACAGCTTTCGTTTGAGCATATATATGTCCCATTGTTCTACTGTGTGTCTGTATCAACTGATTAACAATTTTACAGTTA

Ace file of the UniGene sp_v1.1_unigene66456

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA	-	-	1.0e-38	98%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine).	-	-	0.0	96%
Blast2go	f-box family protein	-	-	2.08237e-38	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	2.08237e-38	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C9EHS9

Fln msg: Separated hits, possible frame ERROR between 120 and 146, Unexpected STOP codon at 3' end. Distance to subject end: 342 aas, your sequence is shorter than subject: 126 - 585

Fln protein: RRDLGCHSMIKRFPKIKSVSLKGKPRFADFNLLPPNWGAxxxxxxxxxxSAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCRFYAIICFSFSYIYSCMSLVLR*

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGATAAAAAGGTTTCCCAAGATCAAGTCTGTGTCACTTAAGGGGAAGCCCAGATTTGCAGATTTTAATTTGTTGCCACCAAATTGGGGGGCCCAxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCTGCTTATCCATTACTTGAGAGGTTGTACTTGAAGAGGATGACTATCACAGATTATGATCTCACATTGCTTGCAAATTCCTTCCTATATTTCAAGGAGCTTGTTATGGTTTGTTGTGATGGATTCAGCACAGGTGGCCTCGCTTCGATTGCAAGCAAATGCAGGTTCTATGCCATTATCTGTTTCTCTTTCAGTTACATATATAGTTGCATGAGTTTGGTTCTCAGATAGCTTTAAATTCAACTATTAATAGGTCTAGGAGAATGACTTTAACTTTTGGGTAATACAAACAGTTTTGTTGACACAGCTTTCGTTTGAGCATATATATGTCCCATTGTTCTACTGTGTGTCTGTATCAACTGATTAACAATTTTACAGTTA

Fln Alignment:

sp_v1.1_unigene66456___MIKRFPKIKSVSLKGKPRFADFNLLPPNWGAHxxxxxxxxxSAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCR
C9EHS9_______________MIKRFPKIKSVSLKGKPRFADFNLVPPNWGAHxxxxxxxxxTAYPLLERLYLKRMTITDYDLTLLANSFLYFKELVMVCCDGFSTGGLASIASKCR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain