SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66417

Length: 290 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene66417
CGTCGTGACCTTGGCTGTCACTCATGTTGGATATTTATGAGGAGAGGCTGTCAAAGCGCGTGTCCTTGGCTGTCGCTTTCTTCAGCTTGGCAGATCTACAACATCTGCCATGGACACAATACCTCGTCACGGCTTGCAAGAAGGGTGATCTGATATCATCTAGAAAGCATGTGAGTGCATGGTGGGAGGATATCTCCTCTCGCCCTGCCTGGAGAAAGTTGCAGAGAAGATGCCCAAGTGAGGAGAGCAGACTCAACAAATTTCAGACTGCAGCAATAAATAAATACATG

Ace file of the UniGene sp_v1.1_unigene66417

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione S-transferase-like protein (Fragment) n=4 Tax=Picea sitchensis RepID=E0ZD18_PICSI	-	-	2.0e-23	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	glutathione s-transferase-like protein	-	-	2.45193e-23	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	2.45193e-23	85%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	2.45193e-23	85%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	2.45193e-23	85%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAN1

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 18 aas, your sequence is shorter than subject: 96 - 214

Fln protein: S*PWLSLMLDIYEERLSKRVSLAVAFFSLADLQHLPWTQYLVTACKKGDLISSRKHVSAWWEDISSRPAWRKLQRRCPSEESRLNKFQTAAINKYM

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGGATATTTATGAGGAGAGGCTGTCAAAGCGCGTGTCCTTGGCTGTCGCTTTCTTCAGCTTGGCAGATCTACAACATCTGCCATGGACACAATACCTCGTCACGGCTTGCAAGAAGGGTGATCTGATATCATCTAGAAAGCATGTGAGTGCATGGTGGGAGGATATCTCCTCTCGCCCTGCCTGGAGAAAGTTGCAGAGAAGATGCCCAAGTGAGGAGAGCAGACTCAACAAATTTCAGACTGCAGCAATAAATAAATACATG

Fln Alignment:

sp_v1.1_unigene66417___LSLMLDIYEERLSKRVSLAVAFFSLADLQHLPWTQYLVTACKKGDLISSRKHVSAWWEDISSRPAWRKLQRRCP
D5AAN1_______________LKKVLDIYEERLSKSKYLAGDFFSLADLQHLPYLDYLVTDCGKGDLISSRKHVKAWWEDISSRPAWKKATGKTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain