SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66365

Length: 470 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene66365
CGTCGTGACCTTGGCTGTCACTCAAGGCTCTTTCGCCAGTATCTACTACTAGCGTGTGACCTTGGTTGTCACTCATTGTTTCGGTTCATCGCATCATTGGGTCGGACCATGATCGTAGCCAACACATTTGGTTCATTTGCATTGGTCATTATTTTGCTCCTCGGTGGATTTCTTCTCTCACGACATGACATTAAAGGCTGGTGGATATGGGGTTACTGGATATCTCCTCTCATGTATGCACAAAATGCCATTTCTGTGAACGAGTTTTTGGGTCACCAGTGGAAAAAGCCAACCTTGAGAAATGATGGTTCCTTATTGAGCAATGACACCTTAGGTGTATATGTTCTAAACTCGCGCGGAATATTTCCACATGGATACTGGTACTGGCTTGGTATTGCAGTTCTGCTCGGATACATGGTGTTCTTCAACATTTGTTTCACTCTCGCGCTAGCTTATCTCAAACCTCTCGA

Ace file of the UniGene sp_v1.1_unigene66365

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9SMW2_RICCO	-	-	6.00036e-42	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	atp-binding cassette	-	-	1.16154e-41	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC-2 type transporter	IPR013525	-	1.16154e-41	72%
Blast2go	Plant PDR ABC transporter associated	IPR013581	-	1.16154e-41	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABN7

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 120 - 207

Fln protein: MIVANTFGSFALVIILLLGGFLLSRHDIKGWWIWGYWISPLMYAQNAISVNEFLGHQWKKPTLRNDGSLLSNDTLGVYVLNSRGIFPHGYWYWLGIAVLLGYMVFFNICFTLALAYLKPL

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGCTCTTTCGCCAGTATCTACTACTAGCGTGTGACCTTGGTTGTCACTCATTGTTTCGGTTCATCGCATCATTGGGTCGGACC_-_ATGATCGTAGCCAACACATTTGGTTCATTTGCATTGGTCATTATTTTGCTCCTCGGTGGATTTCTTCTCTCACGACATGACATTAAAGGCTGGTGGATATGGGGTTACTGGATATCTCCTCTCATGTATGCACAAAATGCCATTTCTGTGAACGAGTTTTTGGGTCACCAGTGGAAAAAGCCAACCTTGAGAAATGATGGTTCCTTATTGAGCAATGACACCTTAGGTGTATATGTTCTAAACTCGCGCGGAATATTTCCACATGGATACTGGTACTGGCTTGGTATTGCAGTTCTGCTCGGATACATGGTGTTCTTCAACATTTGTTTCACTCTCGCGCTAGCTTATCTCAAACCTCTCGA

Fln Alignment:

sp_v1.1_unigene66365___SNDTLGVYVLNSRGIFPHGYWYWLGIAVLLGYMVFFNICFTLALAYLKPL
D5ABN7_______________SSETVGRAVLESRGLFAEAKFYWIGIGALIGFCVLFNVLYTVALTFLNPL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
54		50	50		1.0
63	50	50			1.0
68	50		50		1.0
69		50		50	1.0
70			50	50	1.0
72		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain