SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66357

Length: 465 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene66357
CTATGGGCAGCACTCATTTCAGACCGCTCACAGGGCAGAATACGCCCGGCCACTCGAATCCAAGTCTTCAGAAAATGCTCCACAATGCTAGATCTCGACGTCGTGACCTTGGCTGTCACTCAAGTTCGATTACCAAACCGTTCAAAAGATTCATTCTCTGCTCAAAGACCAGCAGAGGCGGAGCTCAGCGGCAGAAGCAGGACGCACCCATAATACTTTCTTCGACCCTAATTTGAGCGCCGATCTCTCGCGACTTTCTGTTAACATTTCCCCTGTTTTGGTGGAGCAAGTGATTCGGAAATGCTGCAGCGTGAGGTACGGGATCGCATGGCGAGAGGCTCTGGCGTTCTTCAATTGGGCAGGATCGCAAAAGGGATACACGCACAGCCCCGAGGTATACAATGAAATGCTGGATTTATTAGTATGCTTTGCAGGAAGAGGCTGGCTGATGAGGCTCAGGCCCTT

Ace file of the UniGene sp_v1.1_unigene66357 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SCV6_RICCO	-	-	3.0e-16	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	pentatricopeptide repeat-containing protein	-	-	6.44657e-16	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1G1

Fln msg: Distance to subject end: 74 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 119 - 198

Fln protein: PWLSLKFDYQTVQKIHSLLKDQQRRSSAAEAGRTHNTFFDPNLSADLSRLSVNISPVLVEQVIRKCCSVRYGIAWREALAFFNWAGSQKGYTHSPEVYNEMLDLLVCFAGRGWLMRLRP

Protein Length: 120

Fln nts: CTATGGGCAGCACTCATTTCAGACCGCTCACAGGGCAGAATACGCCCGGCCACTCGAATCCAAGTCTTCAGAAAATGCTCCACAATGCTAGATCTCGACGTCGTGACCTTGGCTGTCACTCAAGTTCGATTACCAAACCGTTCAAAAGATTCATTCTCTGCTCAAAGACCAGCAGAGGCGGAGCTCAGCGGCAGAAGCAGGACGCACCCATAATACTTTCTTCGACCCTAATTTGAGCGCCGATCTCTCGCGACTTTCTGTTAACATTTCCCCTGTTTTGGTGGAGCAAGTGATTCGGAAATGCTGCAGCGTGAGGTACGGGATCGCATGGCGAGAGGCTCTGGCGTTCTTCAATTGGGCAGGATCGCAAAAGGGATACACGCACAGCCCCGAGGTATACAATGAAATGCTGGATTTATTAGTATGCTTTGCAGGAAGAGGCTGGCTGATGAGGCTCAGGCCCTT

Fln Alignment:

sp_v1.1_unigene66357___NLSADLSRLSVNISPVLVEQVIRKCCSVRYGIAWREALAFFNWAGSQKGYTHSPEVYNEMLDLL
A9P1G1_______________DVSEVLQKSKVEASPKLVEEVL-----MRFENAGMQAYRFFEWAGKQQDYAHSVEAYHIIIDSL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
349		33		66	0.997452
351	66		33		0.997452
353	33			66	0.997452
354		33	66		0.997452
355	66	33			0.997452
357	75			25	0.99649
358			75	25	0.99649
359		75		25	0.99649
360		75		25	0.99649
361	66	33			0.997452
362	75			25	0.99649
367	75			25	0.99649
368		75		25	0.99649
370	75			25	0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain