SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66349

Length: 456 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene66349
CGTCGTGACCTGGCTGTCACTCAGACAGGAGGATTGAATGGAAACTGAGGCTTTGGACGATGTTATCACCAGGTTGCTCGAGGTGAGAGGCTCAAAGCCTGGCAAGCAGGTTCAATTATCGGAGACGGAGGTCCGCCAGCTTTGCGTTGTCTCGAAGGACATTTTCATGAAACAGCCCATCATGTTGGAATTAGAGGCCCCCGTCAAGATCTGCGGTGATGTTCATGGCCAGTATTCTGATCTTCTACAATCAAATTACTTATTCTTGGGAGATTATGTGGACCGGGGCAAACAAAGCCTAGAGACAATATGTCTCCTCCTTGCTTTCAAAATTAAATACCCAGAAAACTTTTTCCTTCTGAGGGGAAATCATGAATGTGCCTCAATAAATCGCATATATGGTTTCTATGATGAGTGCAAGCGCAGATTCAATGTTAGACTATGGAAACTTTTACA

Ace file of the UniGene sp_v1.1_unigene66349 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Picea sitchensis RepID=C0PPR8_PICSI	-	-	86%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Metallophosphoesterase domain	IPR004843	-	0.0	87%
Blast2go	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 139 - 318

Fln protein: METEALDDVITRLLEVRGSKPGKQVQLSETEVRQLCVVSKDIFMKQPIMLELEAPVKICGDVHGQYSDLLQSNYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKLL

Protein Length: 140

Fln nts: CGTCGTGACCTGGCTGTCACTCAGACAGGAGGATTGA_-_ATGGAAACTGAGGCTTTGGACGATGTTATCACCAGGTTGCTCGAGGTGAGAGGCTCAAAGCCTGGCAAGCAGGTTCAATTATCGGAGACGGAGGTCCGCCAGCTTTGCGTTGTCTCGAAGGACATTTTCATGAAACAGCCCATCATGTTGGAATTAGAGGCCCCCGTCAAGATCTGCGGTGATGTTCATGGCCAGTATTCTGATCTTCTACAATCAAATTACTTATTCTTGGGAGATTATGTGGACCGGGGCAAACAAAGCCTAGAGACAATATGTCTCCTCCTTGCTTTCAAAATTAAATACCCAGAAAACTTTTTCCTTCTGAGGGGAAATCATGAATGTGCCTCAATAAATCGCATATATGGTTTCTATGATGAGTGCAAGCGCAGATTCAATGTTAGACTATGGAAACTTTTACA

Fln Alignment:

sp_v1.1_unigene66349___METEALDDVITRLLEVRGSKPGKQVQLSETEVRQLCVVSKDIFMKQPIMLELEAPVKICGDVHGQYSDLL----------QSNYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKL
C0PPR8_______________METEVLDDVIGRLLEVRGSKPGKQVQLLEAEVRQLCILSKDIFMKQPNLLELEAPVKICGDVHGQYSDLLRLFEYGGLPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain