SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66345

Length: 498 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene66345
CGTCGTGACCTTGGCTGTCACTCAGTTTTTCGCTGACCACTTTCAGGTATCACTGATTGCTTTTATGATTTCTACTGCCAATCTCTTCCATGGGGACTTACAGAGCAGAAGCATTTTCTAATCCTCTCGATGTCTCTCTTTCACGAACGCGTGAAGCCCATCGGGAAAGCTCGTGCAGATTGAGCATGCTCTAATGGCCGTCGGATCTGGTCAAACATCACTGGGAATTAAAGCTGCAAATGGAGTTGTTATTGCAACAGAAAAGAAGTTGCCCTCAATACTTGTTGACGAGTCATCGGTTCAAAAGATACAACTTCTGACATCAAATATCGGAGTAACCTACAGTGGAATGGGTCCTGACTCCAGAGTTCTAGTGCGGAAAAGCAGAAAGCAGGCACAGCAATACTACAAGCTATACAAAGAACCAATCCCTGTTACACAACTTGTAAGGGAAACAGCAACTGTGATGCAAGAATTTACCCAATCCGGTGGAGTAAG

Ace file of the UniGene sp_v1.1_unigene66345

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=2 Tax=core eudicotyledons RepID=Q38HU2_SOLTU	-	-	92%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	proteasome subunit alpha type 2	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	93%
Blast2go	response to zinc ion	GO:0010043	Biological Process	93%
Blast2go	peptidase activity	GO:0008233	Molecular Function	93%
Blast2go	proteasome complex	GO:0000502	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	0.0	93%
Blast2go	Proteasome A-type subunit	IPR023332	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLK4

Fln msg: Distance to subject end: 107 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 114 - 235

Fln protein: SPSGKLVQIEHALMAVGSGQTSLGIKAANGVVIATEKKLPSILVDESSVQKIQLLTSNIGVTYSGMGPDSRVLVRKSRKQAQQYYKLYKEPIPVTQLVRETATVMQEFTQSGGV

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTCGCTGACCACTTTCAGGTATCACTGATTGCTTTTATGATTTCTACTGCCAATCTCTTCCATGGGGACTTACAGAGCAGAAGCATTTTCTAATCCTCTCGATGTCTCTCTTTCACGAACGCGTGAAGCCCATCGGGAAAGCTCGTGCAGATTGAGCATGCTCTAATGGCCGTCGGATCTGGTCAAACATCACTGGGAATTAAAGCTGCAAATGGAGTTGTTATTGCAACAGAAAAGAAGTTGCCCTCAATACTTGTTGACGAGTCATCGGTTCAAAAGATACAACTTCTGACATCAAATATCGGAGTAACCTACAGTGGAATGGGTCCTGACTCCAGAGTTCTAGTGCGGAAAAGCAGAAAGCAGGCACAGCAATACTACAAGCTATACAAAGAACCAATCCCTGTTACACAACTTGTAAGGGAAACAGCAACTGTGATGCAAGAATTTACCCAATCCGGTGGAGTAAG

Fln Alignment:

sp_v1.1_unigene66345___SPSGKLVQIEHALMAVGSGQTSLGIKAANGVVIATEKKLPSILVDESSVQKIQLLTSNIGVTYSGMGPDSRVLVRKSRKQAQQYYKLYKEPIPVTQLVRETATVMQEFTQSGGV
A9NLK4_______________SPSGKLVQIEHALMAVGSGQTSLGIKAANGVVIATEKKLPSILVDESSVQKIQLLTSNIGVTYSGMGPDSRVLVRKSRKQAQQYYKLYKEPIPVTQLVRETATVMQEFTQSGGV

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
105	75	25			0.996479
107		75		25	0.996479
108	75	25			0.996481
110	75			25	0.996481
111	75		25		0.996481
112	25		75		0.996481
114	75	25			0.996481
117			25	75	0.99649
118			25	75	0.99649
122	66		33		0.997452
129	33			66	0.997452
130	33	66			0.997452
133	66	33			0.997452
134	33			66	0.997452
141			33	66	0.997452
142		75		25	0.996486
147	66		33		0.997452
152	66	33			0.997452
154	33		66		0.997452
156			66	33	0.997452
158			75	25	0.99649
159	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain