SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66335

Length: 451 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene66335
GTAATGTGATCAAGATGTTGGAGAGGTTTGACATGATGGATTGCAAACCAGTGACAACTTCGATGATTACAAACTTGAAAAGACTAAGGAGTTTTTGAATCGAGCTCGGTAGATCCTTCCAAGAATAGACAATTGATTAGCTCACTGATGTACTTGGTGAATACTCAACCAAACATATGCTTCGCAGTACATGTTCCCAGTCAATTCCAAGTGGAGCTGAAGCATGATCATTGGATAGCAGCAAAACGTATTCTGAGATATCTACGAGGAACCATCCACTACTGCCTAAAGTATGACAGAAGGAATGCTGTCCAAATAATTGGGTATACAAATTCCAACTGGGGAGGCAATGAGCAAGATGGAAGGAGCACTACAAGAGGATGTTTTAGTTTGGGATCCTCCATGGTCTCATGGATGAGAAGAAAGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene66335 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase n=1 Tax=Cucumis melo RepID=A6YTD9_CUCME	-	-	5.0e-21	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	gag pol polyprotein	-	-	8.61372e-21	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 17 aas, your sequence is shorter than subject: 150 - 363

Fln protein: VM*SRCWRGLT*WIANQ*QLR*LQT*KD*GVFESSSVDPSKNRQLISSLMYLVNTQPNICFAVHVPSQFQVELKHDHWIAAKRILRYLRGTIHYCLKYDRRNAVQIIGYTNSNWGGNEQDGRSTTRGCFSLGSSMVSWMRRKMSDSQGHD

Protein Length: 151

Fln nts: GTAATGTGATCAAGATGTTGGAGAGGTTTGACATGATGGATTGCAAACCAGTGACAACTTCGATGATTACAAACTTGAAAAGACTAAGGAGTTTTTGAATCGAGCTCGGTAGATCCTTCCAAGAATAGACAATTGATTAGCTCACTGATGTACTTGGTGAATACTCAACCAAACATATGCTTCGCAGTACATGTTCCCAGTCAATTCCAAGTGGAGCTGAAGCATGATCATTGGATAGCAGCAAAACGTATTCTGAGATATCTACGAGGAACCATCCACTACTGCCTAAAGTATGACAGAAGGAATGCTGTCCAAATAATTGGGTATACAAATTCCAACTGGGGAGGCAATGAGCAAGATGGAAGGAGCACTACAAGAGGATGTTTTAGTTTGGGATCCTCCATGGTCTCATGGATGAGAAGAAAGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene66335___RQLISSLMYLVNTQPNICFAVHVPSQFQVELKHDHWIAAKRILRYLRGTIHYCLKYDRRNAVQIIGYTNSNWGGNEQDGRSTTRGCFSLGS
B8LKV8_______________RKLVGSLMYLTATRPDIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAGTMNHGILYSTSNNLQLVGYTDSDFAGSIDDRKSTSGYAFHLGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain