SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66334

Length: 409 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene66334
CGTCGTGACCTTGGCTGTCACTCAATTATTACGCACTCTGGATCTTTCTCAAAATAATTTGACAGGAAGAATTCCAACGGAGATTGGGCAGTTAAAGGCGCTGGGAGTTCTCGACCTCAGCTTTAATTTGCTCTATGGTTATATTCCTAAAGCGCTATGTAACTGTACGAAGCTGCAGTTGATCCGATTCTCAGTAAACAGCTTGGTAGGGAGTATACCAACAGAAATTGGTTATCTATTCCAGTTGAAACATCTCCACTTGAGCAACAATAGTCTTAGTGGAAGTATTCCAACTTCTCTGAACAACTGCACTTCTCTCCAAGTGTTGTCCATTGGATACAACGATCTCACTGGTCCAATCCCTTCCGTGTTGGGTTTGATCACAAATTTATCTCTCCTATACTTGGCA

Ace file of the UniGene sp_v1.1_unigene66334

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat receptor-like protein kinase	-	-	7.0e-23	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	leucine-rich repeat transmembrane protein	-	-	1.50289e-41	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	1.50289e-41	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 99 aas, your sequence is shorter than subject: 136 - 818

Fln protein: VVTLAVTQLLRTLDLSQNNLTGRIPTEIGQLKALGVLDLSFNLLYGYIPKALCNCTKLQLIRFSVNSLVGSIPTEIGYLFQLKHLHLSNNSLSGSIPTSLNNCTSLQVLSIGYNDLTGPIPSVLGLITNLSLLYLA

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTACGCACTCTGGATCTTTCTCAAAATAATTTGACAGGAAGAATTCCAACGGAGATTGGGCAGTTAAAGGCGCTGGGAGTTCTCGACCTCAGCTTTAATTTGCTCTATGGTTATATTCCTAAAGCGCTATGTAACTGTACGAAGCTGCAGTTGATCCGATTCTCAGTAAACAGCTTGGTAGGGAGTATACCAACAGAAATTGGTTATCTATTCCAGTTGAAACATCTCCACTTGAGCAACAATAGTCTTAGTGGAAGTATTCCAACTTCTCTGAACAACTGCACTTCTCTCCAAGTGTTGTCCATTGGATACAACGATCTCACTGGTCCAATCCCTTCCGTGTTGGGTTTGATCACAAATTTATCTCTCCTATACTTGGCA

Fln Alignment:

sp_v1.1_unigene66334___TLAVTQLLRTLDLSQNNLTGRIPTEIGQLKALGVLDLSFNLLYGYIPKALCNCTKLQLIRFSVNSLVGSIPTEIGYLFQLKXXXXXXXXXXGSIPTSLNNCTSLQVLSIGYNDLTGPIPSVLGLITNLSLLY
B8LQX6_______________SLCSLSLLRVLNLSGNNLTGTIPPEFGQLKSLGILDLRFNFLRGFIPKALCNCTRLQWIRLSYNSLTGSIPTEFGRLVKLEQLRLRNNNLSGSIPTSLSNCTSLQGLSIGYNSLTGPIPSVLSLIRNLSLLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain