SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66326

Length: 960 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene66326 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207); K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	xyloglucan endo-transglycosylase	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	59%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	73%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	73%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	73%
Blast2go	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKN9

Fln msg:

Fln protein: IRKTALLVIAFVLVLSECNIQLSSEAAGRPYSSYGTAYPLASRHSAVRFNQAFRVLWGPQHEQVTNDEFGVTIWLDRTSGSGFKSLRAYNSGYFSAAIKLQAGYTAGVDTSFYLSNNEVHPDYHDEIDIEFLGTIPGEPYTLQTNIYVRAGNAGSGRIITGREQQIHLWFDPTSDFHRYSILWTPSKIVFIVDGTAIRKYPRTNTSAFPTRPMWLYGSIWDASPWATDNGKYKVDYNYQPFVARYKGFAITDCTDSEEAECQ*

Protein Length: 264

Fln nts: TCATTAGGAAGACTGCATTGCTAGTGATTGCATTTGTACTGGTCCTTTCAGAATGTAATATCCAACTATCCTCAGAAGCAGCGGGCAGGCCTTACTCCTCTTATGGCACGGCTTATCCTCTTGCTTCTCGGCACTCTGCTGTGAGGTTTAATCAAGCCTTTCGTGTTCTATGGGGTCCTCAGCACGAACAAGTCACCAATGACGAATTTGGGGTCACCATTTGGCTCGACAGGACCTCTGGAAGCGGATTCAAATCACTGCGGGCATATAATTCAGGCTACTTCAGTGCCGCCATTAAGCTGCAGGCTGGCTATACTGCAGGAGTTGACACTTCATTCTATTTATCGAACAACGAGGTTCACCCGGACTACCACGACGAAATAGACATTGAATTTCTGGGAACAATACCAGGTGAACCTTATACCTTACAGACCAACATCTATGTAAGAGCTGGAAACGCCGGCAGCGGGAGGATTATCACGGGCCGGGAGCAGCAAATCCACCTCTGGTTTGATCCCACCAGCGATTTCCACCGTTACAGTATTCTCTGGACCCCATCTAAGATTGTATTCATTGTGGATGGTACCGCAATAAGAAAGTATCCCAGGACGAACACCTCCGCCTTCCCAACAAGGCCGATGTGGCTTTACGGATCGATATGGGATGCATCTCCCTGGGCTACAGACAACGGGAAATACAAGGTCGACTACAATTACCAGCCATTCGTGGCAAGGTACAAAGGCTTCGCCATCACCGACTGTACAGACTCAGAGGAGGCCGAATGCCAATAA___ACAGAGTTAAAACCGGCAAATTAAGTTAATTTAGTAAGAATCAAGAATACATATGTTTTTGTTACAGATGATTTATTGAAATATTTGTTGGGAATAATAACAATTTTCCCAATCATCTAATCTAAACTCAAATTTAAATAATATGATTTATAAAAATTATATTTTACAC

Fln Alignment:

sp_v1.1_unigene66326___RKTALLVIAFVLVLSECNIQLSSEAAGRPYSS-YGTAYPLASRHSAVRFNQAFRVLWGPQHEQVTNDEFGVTIWLDRTSGSGFKSLRAYNSGYFSAAIKLQAGYTAGVDTSFYLSNNEVHPDYHDEIDIEFLGTIPGEPYTLQTNIYVRAGNAGSGRIITGREQQIHLWFDPTSDFHRYSILWTPSKIVFIVDGTAIRKYPRTNTSAFPTRPMWLYGSIWDASPWATDNGKYKVDYNYQPFVARYKGFAITDCTDSEEAEC
A9NKN9_______________RELALLVLAFVLLFSVSDIQVS-EAAGRPYSSSHGATYPITSQLSAVKFNQAFGVLWGPQHEQVSDDESGITIWLDRNSGSGFKSLRAYNSGYFSAAIKLQAGYTAGTNTAFYLSNNEVHPDYHDEIDIEFLGTIPGRPYTLQTNIYVLAGNGGSGRIVTGREQQIHLWFDPTSDFHRYSILWTPSKIVFSVDDVPIRRYPRTD--AFPTRPMWVYGSIWDASSWATDSGRYKVDYNYQPFVAKYTDFVLTDCTQSMAAEC

SNPs (tot: 3)

Position	A %	G %	T %	Probability
183	25	75		0.996473
225	25	75		0.996473
231		50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain