SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66292

Length: 376 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene66292
CGTCGTGACCTTGGCTGTCACTCATGGTAATCATGGAGAAACGCTCAGCCTCTAAGTTCACATTTATCTGGAAATTGCGTCGTGACTTGGGTTCATCATCTACTACTCTATGGCTCATGTTGGGCTTAATACTTATGTCAGCAATCTCTGCAGATGCTTTTGATCCTCTGGACCCAAATGGAAACATTACCATTAAATGGGACATCATGTCTTGGACCGGTGATGGCTATGTTGCCACGGTAACCTTGTCGAATTATCAGCTGTACAGACACATACAAAGTCCCGGATGGCACTTGGGCTGGACTTGGGCAAAGAAGGAAATATTATGGTCGATGACTGGTGCAGAAGCAACCGAGCAAGGAGATTGCTCTCGTTT

Ace file of the UniGene sp_v1.1_unigene66292

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein COBRA, putative n=1 Tax=Ricinus communis RepID=B9RLK9_RICCO	-	-	6.0e-34	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	protein cobra	-	-	6.83999e-34	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	6.83999e-34	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl-phosphatidyl inositol-anchored, plant	IPR006918	-	6.83999e-34	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWK3

Fln msg: Distance to subject end: 346 aas, your sequence is shorter than subject: 117 - 458

Fln protein: MVIMEKRSASKFTFIWKLRRDLGSSSTTLWLMLGLILMSAISADAFDPLDPNGNITIKWDIMSWTGDGYVATVTLSNYQLYRHIQSPGWHLGWTWAKKEILWSMTGAEATEQGDCSR

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGGTAATCATGGAGAAACGCTCAGCCTCTAAGTTCACATTTATCTGGAAATTGCGTCGTGACTTGGGTTCATCATCTACTACTCTATGGCTCATGTTGGGCTTAATACTTATGTCAGCAATCTCTGCAGATGCTTTTGATCCTCTGGACCCAAATGGAAACATTACCATTAAATGGGACATCATGTCTTGGACCGGTGATGGCTATGTTGCCACGGTAACCTTGTCGAATTATCAGCTGTACAGACACATACAAAGTCCCGGATGGCACTTGGGCTGGACTTGGGCAAAGAAGGAAATATTATGGTCGATGACTGGTGCAGAAGCAACCGAGCAAGGAGATTGCTCTCGTTT

Fln Alignment:

sp_v1.1_unigene66292___TLWLMLGLILMSAIS---ADAFDPLDPNGNITIKWDIMSWTGDGYVATVTLSNYQLYRHIQSPGWHLGWTWAKKEILWSMTGAEATEQGDCSR
A9NWK3_______________TSGILLGLTLIIAFAFSPTGAYDPLDPNGNITIKWDIMSWTPDGYLAVVTINNFQQYRHIQSPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSK

SNPs (tot: 4)

Position	C %	G %	T %	Probability
164	33		66	0.997476
165		33	66	0.997476
169	33		66	0.997464
171	66		33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain