SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66278

Length: 254 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene66278
CGTCGTGACCTTGGCTGTCACTCAATGTTGCAAAGGTGAGGAAACTGATGAAAGACAGGGGCGTCAAAAAGGAACCTGGATGCAGTTGGATTGAATATCGAAAAAAGATCCATTTATTCGTTGTAGGAGACAGGTCCCACCCACAAAGTGAGGAAATATATGCAACAGTAGAAACTTTAATTCGAAAGATCAAGGAAGCTGGGTATGTGCCTGAAATAAACTTTATGCTTCATGAAGTTGAGGATGAACTGAAA

Ace file of the UniGene sp_v1.1_unigene66278

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Pinus nigra RepID=B3U1V2_9CONI	-	-	2.0e-21	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	pentatricopeptide repeat protein	-	-	4.97195e-24	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 75 aas, your sequence is shorter than subject: 84 - 246

Fln protein: S*PWLSLNVAKVRKLMKDRGVKKEPGCSWIEYRKKIHLFVVGDRSHPQSEEIYATVETLIRKIKEAGYVPEINFMLHEVEDELK

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTGCAAAGGTGAGGAAACTGATGAAAGACAGGGGCGTCAAAAAGGAACCTGGATGCAGTTGGATTGAATATCGAAAAAAGATCCATTTATTCGTTGTAGGAGACAGGTCCCACCCACAAAGTGAGGAAATATATGCAACAGTAGAAACTTTAATTCGAAAGATCAAGGAAGCTGGGTATGTGCCTGAAATAAACTTTATGCTTCATGAAGTTGAGGATGAACTGAAA

Fln Alignment:

sp_v1.1_unigene66278___NVAKVRKLMKDRGVKKEPGCSWIEYRKKIHLFVVGDRSHPQSEEIYATVETLIRKIKEAGYVPEINFMLHEVEDELK
D5AAE0_______________DVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain