SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene66210

Length: 531 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene66210
ATTGACCCTGCTGGATCAGAGCGGAAATGAAAAGCACAAAACCCATACGCACTTCGATCGGATGCTCGAGAGCGGGCCTTATACGTTGAAATACCGAGGGAGCATGTGAAGTGCTTCAAGAAATTTGCCCCAAGGGGTTGCACTGCAAAGGACGGACTTCCTTCAGCATAAGTGCCAGGTCCAAGTGCTCTTTATTGCACCAAAATCACCTTGGGCTTGCCCTTGTCCTCTTTTTTTGAAGTTCGTGTAATTTCGACAATGTAGACCATAGCAAGATGGAACTGTGGTGGTTGGTTTAGCGCTATCGATCTTATCAGTGATCCAATGCCTTGCTGGAAATAAATCAATTCTGGCATAATGGCATCTGGATATCATTTTCTCTCTCTAGCAGAGGGTGCTGCTCTACCGGCTTTTTGCCCAGGGTATTTTGGAAGGAACTGAGAGTCCTTAAATATGGGAAATGAAGCATTTGTAATTTGCTGGGATTTCAAATTAATTTAAGTAGTTTGATCTGGCAGAATATAATCAGAA

Ace file of the UniGene sp_v1.1_unigene66210

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Speckle-type POZ protein n=4 Tax=Andropogoneae RepID=B6TJ67_MAIZE	-	-	5.0e-12	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	speckle-type poz	-	-	8.81928e-12	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUQ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 124 aas, your sequence is shorter than subject: 83 - 411

Fln protein: LTLLDQSGNEKHKTHTHFDRMLESGPYTLKYRGSM*SASRNLPQGVALQRTDFLQHKCQVQVLFIAPKSPWACPCPLFLKFV*

Protein Length: 84

Fln nts: ATTGACCCTGCTGGATCAGAGCGGAAATGAAAAGCACAAAACCCATACGCACTTCGATCGGATGCTCGAGAGCGGGCCTTATACGTTGAAATACCGAGGGAGCATGTGAAGTGCTTCAAGAAATTTGCCCCAAGGGGTTGCACTGCAAAGGACGGACTTCCTTCAGCATAAGTGCCAGGTCCAAGTGCTCTTTATTGCACCAAAATCACCTTGGGCTTGCCCTTGTCCTCTTTTTTTGAAGTTCGTGTAATTTCGACAATGTAGACCATAGCAAGATGGAACTGTGGTGGTTGGTTTAGCGCTATCGATCTTATCAGTGATCCAATGCCTTGCTGGAAATAAATCAATTCTGGCATAATGGCATCTGGATATCATTTTCTCTCTCTAGCAGAGGGTGCTGCTCTACCGGCTTTTTGCCCAGGGTATTTTGGAAGGAACTGAGAGTCCTTAAATATGGGAAATGAAGCATTTGTAATTTGCTGGGATTTCAAATTAATTTAAGTAGTTTGATCTGGCAGAATATAATCAGAA

Fln Alignment:

sp_v1.1_unigene66210___LTLLDQSGNEKHKTHTHFDRMLESGPYTLKYRGSM*SASRNLPQGVALQRTDFLQH-----KCQVQVLFIAPKSP
A9NUQ7_______________LTLVDQSGKGKNKVHSHFDRALESGPYTLKYRGSMWGYKRFFRRAV-LETSDYLKDDCLKLNCTVGVVVSATESP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain