SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65940

Length: 501 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene65940
CGTCGTGAGCTTTGCGTGAGTGTGGATCGATAATGGATCGTTACGAGTTAGTTAAGGACATCGGGTCTGGTAATTTCGGAGTGGCGAGGCTCGTGCGGGACAAGAAGACACGAGAGCTCGTTGCAGTCAAGTATATCGAGCGAGGCCAAAAGATTGATGAAAATGTGAGGCGGGAGATTATTAATCACAGATCTCTGCGGCATCCCAACATAGTTCGCTTCAAGGAGTCTTCTCTATTGCATTCCCAACCGAAATCAACAGTGGGAACGCCCGCCTACATTGCTCCAGAGGTTCTCTCCAAGAAAGAGTACGATGGCAAGATTGCAGATGTCTGGTCATGTGGGGTGACTTTGTACGTGATGCTGGTCGGCGCTTATCCTTTCGAAGATCCAGAGGATCCCAAAAACTTTAGAAAAACCATTGGGAGAATATTAAGCGCCCAATATTCAATACCGAACTATGTATACATATCTGCAGAATGCAGACACCTGCTGTCAAGGA

Ace file of the UniGene sp_v1.1_unigene65940

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase SAPK1, putative n=1 Tax=Ricinus communis RepID=B9T099_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	1.4013e-44	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.4013e-44	95%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	1.4013e-44	95%
Blast2go	Protein kinase-like domain	IPR011009	-	1.4013e-44	95%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	1.4013e-44	95%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	1.4013e-44	95%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKB4

Fln msg: Distance to subject end: 102 aas, atg_distance in limit (1-15): atg_distance = 6, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 156 - 356

Fln protein: MDRYELVKDIGSGNFGVARLVRDKKTRELVAVKYIERGQKIDENVRREIINHRSLRHPNIVRFKESSLLHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIGRILSAQYSIPNYVYISAECRHLLSR

Protein Length: 157

Fln nts: CGTCGTGAGCTTTGCGTGAGTGTGGATCGATA_-_ATGGATCGTTACGAGTTAGTTAAGGACATCGGGTCTGGTAATTTCGGAGTGGCGAGGCTCGTGCGGGACAAGAAGACACGAGAGCTCGTTGCAGTCAAGTATATCGAGCGAGGCCAAAAGATTGATGAAAATGTGAGGCGGGAGATTATTAATCACAGATCTCTGCGGCATCCCAACATAGTTCGCTTCAAGGAGTCTTCTCTATTGCATTCCCAACCGAAATCAACAGTGGGAACGCCCGCCTACATTGCTCCAGAGGTTCTCTCCAAGAAAGAGTACGATGGCAAGATTGCAGATGTCTGGTCATGTGGGGTGACTTTGTACGTGATGCTGGTCGGCGCTTATCCTTTCGAAGATCCAGAGGATCCCAAAAACTTTAGAAAAACCATTGGGAGAATATTAAGCGCCCAATATTCAATACCGAACTATGTATACATATCTGCAGAATGCAGACACCTGCTGTCAAGGA

Fln Alignment:

sp_v1.1_unigene65940___DRYELVKDIGSGNFGVARLVRDKKTRELVAVKYIERGQKIDENVRREIINHRSLRHPNIVRFKE
B8LKB4_______________DRYELVKDIGSGNFGVARLMRDKQTKELVAVKYIERGEKIDENVQREIINHRSLKHPNIVRFRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain