SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65932

Length: 362 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene65932
CGTCGTGACCTTGGCTGTCACTCAAGTTCTGGTTGATTGGAGGCACCAGTGCCCACCCTGCAGCTGTTGTACAGGGCCCGTCGTGACCTTGGCTGTCACTCACATATCTTTCACACTGACATCCAAGTCTGCTGGTGAAGACATTGATGATGAATTTGCAGATCTCTACATTGTCAAATGGAGCTATCTCATGATCCCTCCAATCACTATAATGATGATAAATATAATTGCAATAGGTGTTGGAGTTTCAAGGACCATATACAGTGAAATTCCACAGTGGAGCAAGCTTTTGGGAGGTGTCTTCTTTAGTTTCTGGGTGCTATGCCATCTCTATCCATTTGCAAAGGGTTTGATGGGCAGGA

Ace file of the UniGene sp_v1.1_unigene65932

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulose synthase-like protein D3 n=2 Tax=Arabidopsis RepID=CSLD3_ARATH	-	-	6.0e-34	66%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	59%
Blast2go	cellulose synthase a catalytic subunit 3	-	-	4.10817e-34	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	4.10817e-34	85%
Blast2go	response to cold	GO:0009409	Biological Process	4.10817e-34	85%
Blast2go	shoot development	GO:0048367	Biological Process	4.10817e-34	85%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	4.10817e-34	85%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	4.10817e-34	85%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	4.10817e-34	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cellulose synthase	IPR005150	-	4.10817e-34	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Overlapping hits, possible frame ERROR between 77 and 74, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 45 aas, your sequence is shorter than subject: 120 - 1096

Fln protein: S*PWLSLKFWLIGGTSAHPAAVVxxxVVTLAVTHISFTLTSKSAGEDIDDEFADLYIVKWSYLMIPPITIMMINIIAIGVGVSRTIYSEIPQWSKLLGGVFFSFWVLCHLYPFAKGLMGR

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCTGGTTGATTGGAGGCACCAGTGCCCACCCTGCAGCTGTTGTAxxxxxxxxxGTCGTGACCTTGGCTGTCACTCACATATCTTTCACACTGACATCCAAGTCTGCTGGTGAAGACATTGATGATGAATTTGCAGATCTCTACATTGTCAAATGGAGCTATCTCATGATCCCTCCAATCACTATAATGATGATAAATATAATTGCAATAGGTGTTGGAGTTTCAAGGACCATATACAGTGAAATTCCACAGTGGAGCAAGCTTTTGGGAGGTGTCTTCTTTAGTTTCTGGGTGCTATGCCATCTCTATCCATTTGCAAAGGGTTTGATGGGCAGGA

Fln Alignment:

sp_v1.1_unigene65932___WLSLKFWLIGGTSAHPAAVVQxPVVTLAVTHISFTLTSKSAGEDIDDEFADLYIVKWSYLXXXXXXXXXXXXXXXGVGVSRTIYSEIPQWSKLLGGVFFSFWVLCHLYPFAKGLMGR
Q4VWW7_______________WRNEQFWVIGGVSAHLFAVIQxLLKVLAGVDTNFTVTSKASDEGGD--FAELYIIKWTALLIPPTTLLIINIVGVVAGISYAISTGYRSWGPLFGKLFFAFWVIVHLYPFLKGLMGR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
79		66		33	0.997476
82		66		33	0.997476
85	33			66	0.997476
87	66		33		0.997476
88		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain