SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65693

Length: 356 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene65693
CTAGCGGACTCAATCACTCCTCATGCGATTTATTTTGAACACTTTGAAATCCACCCAATTAAGATTGTTGCAAGCTTTCTTCCAGGACACCCACGTGCAAATTATACATCAGCCCAGGAAACATTGCGGGCATTTTTGCATTCTATTATAAAGATACCAGCTGTTAAGGGCACTGTTGTGGAGCTTAATGGTCTTCTTCTTTCACATGCCTTGATGACATTCCATGAACTGGCCATCAAATGTGCTCAACATTATTCATGGTATATGATGAGGGCAATATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTCTTTGATGACTCGGCATCTACATCTTTTGA

Ace file of the UniGene sp_v1.1_unigene65693

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	4.39545e-41	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I7D8

Fln msg: Distance to subject end: 319 aas, your sequence is shorter than subject: 118 - 2168

Fln protein: LADSITPHAIYFEHFEIHPIKIVASFLPGHPRANYTSAQETLRAFLHSIIKIPAVKGTVVELNGLLLSHALMTFHELAIKCAQHYSWYMMRAIYIAKGSQLLPPSFVSLFDDSASTSF

Protein Length: 119

Fln nts: CTAGCGGACTCAATCACTCCTCATGCGATTTATTTTGAACACTTTGAAATCCACCCAATTAAGATTGTTGCAAGCTTTCTTCCAGGACACCCACGTGCAAATTATACATCAGCCCAGGAAACATTGCGGGCATTTTTGCATTCTATTATAAAGATACCAGCTGTTAAGGGCACTGTTGTGGAGCTTAATGGTCTTCTTCTTTCACATGCCTTGATGACATTCCATGAACTGGCCATCAAATGTGCTCAACATTATTCATGGTATATGATGAGGGCAATATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTCTTTGATGACTCGGCATCTACATCTTTTGA

Fln Alignment:

sp_v1.1_unigene65693___YFEHFEIHPIKIVASFLPGHPRANYTSAQETLRAFLHSIIKIPAVKGTVVELNGLLLSHALMTFHELAIKCAQHYSWYMMRAIYIAKGSQLLPPSFVSLFDDSASTS
F6I7D8_______________YFDRFEIHPIKIIASFLPGDSYSSYSSAQETVRSLLHSVIKIPAIKNMVVELNGVLITHALITMRELFIKCAQHYSWYAMRAIYIAKGSPLLPPSFASIFDDSASSS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
147		33		66	0.997458
148	66		33		0.997458
150	66	33			0.997459
151	66		33		0.997459
152	66			33	0.997459
155		33		66	0.997458
156	66	33			0.997458
157		66		33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain